# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #运行命令:# # # # # # /图书馆/框架/ R.framework /资源/ bin / R CMD检查——安装=检查:TCGAutils.install-out。txt -库= /图书馆/框架/ R.framework——no-vignettes计时TCGAutils_1.18.0.tar.gz /资源/库### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/TCGAutils.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TCGAutils/DESCRIPTION’ ... OK * this is package ‘TCGAutils’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TCGAutils’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘BiocGenerics:::replaceSlots’ ‘GenomicRanges:::.normarg_field’ ‘S4Vectors:::selectSome’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed simplifyTCGA 27.250 1.536 29.545 TCGAprimaryTumors 15.678 1.296 17.967 trimColData 13.895 0.842 15.720 curatedTCGAData-helpers 12.184 0.679 13.617 imputeAssay 11.960 0.652 13.439 oncoPrintTCGA 11.671 0.745 19.770 makeSummarizedExperimentFromGISTIC 6.882 0.494 9.473 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.16-bioc/meat/TCGAutils.Rcheck/00check.log’ for details.

# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #运行命令:# # # # # # /图书馆/框架/ R.framework /资源/ bin / R CMD安装TCGAutils # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # *安装库' /图书馆/框架/ R.framework /版本/ 4.2 /资源/库的安装源* * *包“TCGAutils”……安装使用了* * * * *学院* * * R * *数据byte-compile和准备延迟加载包* *帮助安装帮助指数* * * * *构建包安装小插曲指数* * * *测试如果安装包可以从临时位置* *加载测试如果安装包可以从最终位置* *加载测试如果安装包保存记录的临时安装路径* (TCGAutils)完成

R版本4.2.3(2023-03-15)——“游击手小猎犬”版权(C) 2023 R统计计算平台:基金会x86_64-apple-darwin17.0(64位)R是免费软件,绝对没有保修。欢迎您重新分配它在特定条件下。类型的许可证()”或“许可证()”分布的细节。与许多贡献者R是一个合作项目。类型的贡献者()的更多信息和引用()的引用或R包出版物。类型的演示()对于一些演示,对联机帮助的帮助()”,或“help.start()的HTML浏览器接口来帮助。类型的q()退出r >库(testthat) > >库(TCGAutils) > > test_check (“TCGAutils”)[失败0 |警告0 |跳过0 |通过49]> > proc.time用户系统运行12.403 0.643 16.545 ()