# # # R代码从装饰图案来源的小插曲affy /本月/ doc / customMethods。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:customMethods。Rnw: 51-52 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(affy) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:customMethods。Rnw: 59 - 63 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # normalize.AffyBatch.methods () bgcorrect.methods () pmcorrect.methods () express.summary.stat.methods() # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:customMethods。Rnw: 68 - 71 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(affydata)数据(稀释)normalize.methods(稀释)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:customMethods。Rnw: 129 - 140 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # pmcorrect。subtractmmsometimes < -函数(对象){# #减去mm mm.subtracted < - pm(对象)——mm(对象)# #找到哪些是不必要的和无效的<——(mm修复它们。减去< = 0)mm.subtracted(无效)< - - - - - -点(对象)(无效)返回(mm.subtracted)} # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:customMethods。Rnw: 144 - 145 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # upDate.pmcorrect.methods (c (pmcorrect.methods (),“subtractmmsometimes”)) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:customMethods。Rnw: 151 - 167 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # huber < -函数(y, k = 1.5, tol = 1 e-06) {y < - y [! is.na (y)] n < -长度(y) < -μ值(y) s < -疯了(y)如果(s = = 0)停止(“不能估计规模:疯了这个示例是零”)重复{yy < - pmin (pmax(μ- k * s, y)μ+ k * s) mu1 < - (yy) / n如果(abs(μ- mu1) < tol * s)打破μ< - mu1}列表(μ=μs = s)} # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:customMethods。Rnw: 173 - 181 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # computeExprVal。huber < -函数(探针){res < -应用(探针2 huber)μ< - unlist(拉普兰人(res,函数(x) x美元μ))s < - unlist(拉普兰人(res,函数(x) x $ s))返回(列表(exprs =μ,se.exprs = s))} upDate.generateExprSet.methods (c (generateExprSet.methods (), huber))