释放的历史“刀”包 ======================================== 版本1.3.8[2014-09-28]:使用标题“标题:”字段的描述文件。版本1.3.7[2014-05-08]:-在cleavageRanges中使用' split '而不是' lapply '创建IRangesList, aastringset方法的速度要快两倍以上。版本1.3.6[2014-05-03]:-为字符、AAString和AAStringSet添加cleavageRanges方法。- cleave, astring返回一个AAStringSet对象而不是AAStringSetList对象。修复cleavageSites,AAStringSet的返回值。版本1.3.5[2014-04-30]:修复cleavageSites,AAStringSet的定义。版本1.3.4[2014-04-30]:-为character, aaststring和AAStringSet添加cleavageSites方法。版本1.3.3[2014-04-28]:-避免重复消化多肽导致一个休的速度提高和一个休的内存减少(从1.1.8删除修复和部分重新引入原始算法)。-删除内存测试和“memoryThreshold”参数(在不同的平台上失败，使用“新的”分割算法不再重要)-改变默认的"unique"参数为"unique=TRUE"。 Version 1.3.2 [2014-04-25]: - Introduce simple memory test and "memoryThreshold" argument to avoid the calculation of ridiculous high numbers of "missedCleavages" and peptide combinations. Version 1.3.1 [2014-04-25]: - Add "custom" argument to allow the user defining own cleavage rules. Version 1.1.8 [2014-03-26]: - Fix missedCleavages>1. - Add argument "unique". - Add methods, Biostrings, IRanges to NAMESPACE. Version 1.1.7 [2014-03-25]: - Typo in the manual page. Version 1.1.5 [2014-02-25]: - Using AAStringSetList constructor for list of characters instead of creating a lot of AAStringSets dramatically decreases running time for cleave,AAStringSet-method. Version 1.1.4 [2013-12-20]: - tests: - move tests into tests/testthat to adapt to testthat 0.8 and new CRAN policy. Version 0.99.5 [2013-07-24]: - vignette: - remove duplicated sessionInfo entries. Version 0.99.4 [2013-07-23]: - vignette: - use BiocStyle. - add sessionInfo() and TOC. Version 0.99.3 [2013-07-08]: - vignette: add second BRAIN reference. Version 0.99.2 [2013-06-17]: - Replace own AAStringSetList constructor by Biostrings::AAStringSetList. - man/cleaver-package.Rd: remove static date. - vignette: add dynamic date and don't load Biostrings manually anymore. - NAMESPACE: don't import from Biostrings and IRanges. Version 0.99.1 [2013-05-30]: - Add S4-methods for character, AAString, AAStringSet. - man/cleave-methods.Rd: split table of cleavage rules to reduce table width. - Extend vignette (add BRAIN and UniProt.ws based examples). Version 0.99.0 [2013-04-27]: - Initial release.