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(Rfn..Roche.Rdash.class) 400 0 R] /Limits [(Doc-Start) (Rfn..Roche.Rdash.class)] >> endobj 3117 0 obj << /Names [(Rfn..Rpcent.in.Rpcent.,AlignedRead,RangesList.Rdash.method) 524 0 R (Rfn..SRUtil.Rdash.class) 641 0 R (Rfn..ShortReadBase.Rdash.class) 401 0 R (Rfn..Solexa.Rdash.class) 402 0 R (Rfn.AlignedDataFrame) 464 0 R (Rfn.AlignedDataFrame.1) 14 0 R] /Limits [(Rfn..Rpcent.in.Rpcent.,AlignedRead,RangesList.Rdash.method) (Rfn.AlignedDataFrame.1)] >> endobj 3118 0 obj << /Names [(Rfn.AlignedDataFrame.Rdash.class) 484 0 R (Rfn.AlignedDataFrame.Rdash.class.1) 18 0 R (Rfn.AlignedRead) 503 0 R (Rfn.AlignedRead.1) 22 0 R (Rfn.AlignedRead.Rdash.class) 491 0 R (Rfn.AlignedRead.Rdash.class.1) 26 0 R] /Limits [(Rfn.AlignedDataFrame.Rdash.class) (Rfn.AlignedRead.Rdash.class.1)] >> endobj 3119 0 obj << /Names [(Rfn.AnnotatedDataFrame) 490 0 R (Rfn.ArrayIntensity) 796 0 R (Rfn.ArrayIntensity.Rdash.class) 797 0 R (Rfn.BAMQA.Rdash.class) 610 0 R (Rfn.BAMQA.Rdash.class.1) 38 0 R (Rfn.BStringSet) 1023 0 R] /Limits [(Rfn.AnnotatedDataFrame) (Rfn.BStringSet)] >> endobj 3120 0 obj << /Names [(Rfn.BiocParallelParam) 878 0 R (Rfn.BowtieQA.Rdash.class) 632 0 R (Rfn.BowtieQA.Rdash.class.1) 42 0 R (Rfn.DNAStringSet.Rdash.class) 1202 0 R (Rfn.ExperimentPath) 704 0 R (Rfn.ExperimentPath.Rdash.class) 702 0 R] /Limits [(Rfn.BiocParallelParam) (Rfn.ExperimentPath.Rdash.class)] >> endobj 3121 0 obj << /Names [(Rfn.ExperimentPath.Rdash.class.1) 62 0 R (Rfn.FastqFile) 725 0 R (Rfn.FastqFile.Rdash.class) 723 0 R (Rfn.FastqFile.Rdash.class.1) 66 0 R (Rfn.FastqFileList) 726 0 R (Rfn.FastqFileList,ANY.Rdash.method) 727 0 R] /Limits [(Rfn.ExperimentPath.Rdash.class.1) (Rfn.FastqFileList,ANY.Rdash.method)] >> endobj 3122 0 obj << /Names [(Rfn.FastqFileList,character.Rdash.method) 728 0 R (Rfn.FastqFileList.Rdash.class) 729 0 R (Rfn.FastqFileReader.Rdash.class) 730 0 R (Rfn.FastqQA) 1571 0 R (Rfn.FastqQA.Rdash.class) 880 0 R (Rfn.FastqQuality) 1008 0 R] /Limits [(Rfn.FastqFileList,character.Rdash.method) (Rfn.FastqQuality)] >> endobj 3123 0 obj << /Names [(Rfn.FastqQuality,BStringSet.Rdash.method) 1009 0 R (Rfn.FastqQuality,character.Rdash.method) 1010 0 R (Rfn.FastqQuality,missing.Rdash.method) 1011 0 R (Rfn.FastqQuality.Rdash.class) 1052 0 R (Rfn.FastqSampler) 731 0 R (Rfn.FastqSampler.Rdash.class) 732 0 R] /Limits [(Rfn.FastqQuality,BStringSet.Rdash.method) (Rfn.FastqSampler.Rdash.class)] >> endobj 3124 0 obj << /Names [(Rfn.FastqSamplerList) 733 0 R (Rfn.FastqSamplerList,ANY.Rdash.method) 734 0 R (Rfn.FastqSamplerList,character.Rdash.method) 735 0 R (Rfn.FastqSamplerList.Rdash.class) 736 0 R (Rfn.FastqStreamer) 737 0 R (Rfn.FastqStreamer,ANY,IRanges.Rdash.method) 738 0 R] /Limits [(Rfn.FastqSamplerList) (Rfn.FastqStreamer,ANY,IRanges.Rdash.method)] >> endobj 3125 0 obj << /Names [(Rfn.FastqStreamer,ANY,missing.Rdash.method) 739 0 R (Rfn.FastqStreamer,ANY,numeric.Rdash.method) 740 0 R (Rfn.FastqStreamer.Rdash.class) 741 0 R (Rfn.FastqStreamerList) 742 0 R (Rfn.FastqStreamerList,ANY.Rdash.method) 743 0 R (Rfn.FastqStreamerList,character.Rdash.method) 744 0 R] /Limits [(Rfn.FastqStreamer,ANY,missing.Rdash.method) (Rfn.FastqStreamerList,character.Rdash.method)] >> endobj 3126 0 obj << /Names [(Rfn.FastqStreamerList.Rdash.class) 745 0 R (Rfn.FilterRules) 1989 0 R (Rfn.GRanges) 566 0 R (Rfn.IRanges.Rdash.class) 757 0 R (Rfn.IntegerQuality) 1012 0 R (Rfn.IntegerQuality.Rdash.class) 1053 0 R] /Limits [(Rfn.FastqStreamerList.Rdash.class) (Rfn.IntegerQuality.Rdash.class)] >> endobj 3127 0 obj << /Names [(Rfn.Intensity.Rdash.class) 795 0 R (Rfn.Intensity.Rdash.class.1) 74 0 R (Rfn.IntensityInfo.Rdash.class) 800 0 R (Rfn.IntensityMeasure.Rdash.class) 801 0 R (Rfn.Logic,SRFilterResult,SRFilterResult.Rdash.method) 2000 0 R (Rfn.MAQMapQA) 834 0 R] /Limits [(Rfn.Intensity.Rdash.class) (Rfn.MAQMapQA)] >> endobj 3128 0 obj << /Names [(Rfn.MAQMapQA.Rdash.class) 833 0 R (Rfn.MAQMapQA.Rdash.class.1) 78 0 R (Rfn.MatrixQuality) 1013 0 R (Rfn.MatrixQuality.Rdash.class) 1056 0 R (Rfn.NumericQuality) 1014 0 R (Rfn.NumericQuality.Rdash.class) 1059 0 R] /Limits [(Rfn.MAQMapQA.Rdash.class) (Rfn.NumericQuality.Rdash.class)] >> endobj 3129 0 obj << /Names [(Rfn.OptionalFunction.Rdash.class) 1987 0 R (Rfn.PossibleMethod.Rdash.class) 1988 0 R (Rfn.QA) 939 0 R (Rfn.QA.Rdash.class) 896 0 R (Rfn.QA.Rdash.class.1) 86 0 R (Rfn.QAAdapterContamination) 920 0 R] /Limits [(Rfn.OptionalFunction.Rdash.class) (Rfn.QAAdapterContamination)] >> endobj 3130 0 obj << /Names [(Rfn.QAAdapterContamination.Rdash.class) 898 0 R (Rfn.QACollate) 918 0 R (Rfn.QACollate,QAFastqSource.Rdash.method) 952 0 R (Rfn.QACollate,missing.Rdash.method) 951 0 R (Rfn.QACollate.Rdash.class) 899 0 R (Rfn.QAData) 953 0 R] /Limits [(Rfn.QAAdapterContamination.Rdash.class) (Rfn.QAData)] >> endobj 3131 0 obj << /Names [(Rfn.QAData.Rdash.class) 900 0 R (Rfn.QAFastqSource) 919 0 R (Rfn.QAFastqSource.Rdash.class) 901 0 R (Rfn.QAFiltered) 954 0 R (Rfn.QAFiltered.Rdash.class) 902 0 R (Rfn.QAFlagged) 955 0 R] /Limits [(Rfn.QAData.Rdash.class) (Rfn.QAFlagged)] >> endobj 3132 0 obj << /Names [(Rfn.QAFlagged.Rdash.class) 903 0 R (Rfn.QAFrequentSequence) 921 0 R (Rfn.QAFrequentSequence.Rdash.class) 904 0 R (Rfn.QANucleotideByCycle) 922 0 R (Rfn.QANucleotideByCycle.Rdash.class) 905 0 R (Rfn.QANucleotideUse) 923 0 R] /Limits [(Rfn.QAFlagged.Rdash.class) (Rfn.QANucleotideUse)] >> endobj 3133 0 obj << /Names [(Rfn.QANucleotideUse.Rdash.class) 906 0 R (Rfn.QAQualityByCycle) 924 0 R (Rfn.QAQualityByCycle.Rdash.class) 907 0 R (Rfn.QAQualityUse) 925 0 R (Rfn.QAQualityUse.Rdash.class) 908 0 R (Rfn.QAReadQuality) 926 0 R] /Limits [(Rfn.QANucleotideUse.Rdash.class) (Rfn.QAReadQuality)] >> endobj 3134 0 obj << /Names [(Rfn.QAReadQuality.Rdash.class) 909 0 R (Rfn.QASequenceUse) 927 0 R (Rfn.QASequenceUse.Rdash.class) 910 0 R (Rfn.QASource.Rdash.class) 911 0 R (Rfn.QASummary.Rdash.class) 912 0 R (Rfn.QualityScore) 1007 0 R] /Limits [(Rfn.QAReadQuality.Rdash.class) (Rfn.QualityScore)] >> endobj 3135 0 obj << /Names [(Rfn.QualityScore.1) 94 0 R (Rfn.QualityScore.Rdash.class) 616 0 R (Rfn.QualityScore.Rdash.class.1) 98 0 R (Rfn.RangedData) 565 0 R (Rfn.Ranges) 567 0 R (Rfn.RangesList) 564 0 R] /Limits [(Rfn.QualityScore.1) (Rfn.RangesList)] >> endobj 3136 0 obj << /Names [(Rfn.RochePath) 1349 0 R (Rfn.RochePath.Rdash.class) 1335 0 R (Rfn.RochePath.Rdash.class.1) 146 0 R (Rfn.RocheSet) 1387 0 R (Rfn.RocheSet,RochePath.Rdash.method) 1351 0 R (Rfn.RocheSet,character.Rdash.method) 1350 0 R] /Limits [(Rfn.RochePath) (Rfn.RocheSet,character.Rdash.method)] >> endobj 3137 0 obj << /Names [(Rfn.RocheSet.Rdash.class) 1386 0 R (Rfn.RocheSet.Rdash.class.1) 150 0 R (Rfn.RtaIntensity) 1404 0 R (Rfn.RtaIntensity.1) 154 0 R (Rfn.RtaIntensity.Rdash.class) 1408 0 R (Rfn.RtaIntensity.Rdash.class.1) 158 0 R] /Limits [(Rfn.RocheSet.Rdash.class) (Rfn.RtaIntensity.Rdash.class.1)] >> endobj 3138 0 obj << /Names [(Rfn.SFastqQuality) 1015 0 R (Rfn.SFastqQuality,BStringSet.Rdash.method) 1016 0 R (Rfn.SFastqQuality,character.Rdash.method) 1017 0 R (Rfn.SFastqQuality,missing.Rdash.method) 1018 0 R (Rfn.SFastqQuality.Rdash.class) 1061 0 R (Rfn.SRError) 2070 0 R] /Limits [(Rfn.SFastqQuality) (Rfn.SRError)] >> endobj 3139 0 obj << /Names [(Rfn.SRError.Rdash.class) 2071 0 R (Rfn.SRFilter.Rdash.class) 1119 0 R (Rfn.SRFilter.Rdash.class.1) 230 0 R (Rfn.SRFilterResult) 2003 0 R (Rfn.SRFilterResult.Rdash.class) 1998 0 R (Rfn.SRFilterResult.Rdash.class.1) 234 0 R] /Limits [(Rfn.SRError.Rdash.class) (Rfn.SRFilterResult.Rdash.class.1)] >> endobj 3140 0 obj << /Names [(Rfn.SRList) 2072 0 R (Rfn.SRList.Rdash.class) 640 0 R (Rfn.SRSet.Rdash.class) 1391 0 R (Rfn.SRSet.Rdash.class.1) 238 0 R (Rfn.SRUtil.Rdash.class) 2058 0 R (Rfn.SRUtil.Rdash.class.1) 242 0 R] /Limits [(Rfn.SRList) (Rfn.SRUtil.Rdash.class.1)] >> endobj 3141 0 obj << /Names [(Rfn.SRVector) 2074 0 R (Rfn.SRVector.Rdash.class) 2075 0 R (Rfn.SRWarn) 2076 0 R (Rfn.SRWarn.Rdash.class) 2077 0 R (Rfn.ShortRead) 1444 0 R (Rfn.ShortRead,DNAStringSet,BStringSet.Rdash.method) 1445 0 R] /Limits [(Rfn.SRVector) (Rfn.ShortRead,DNAStringSet,BStringSet.Rdash.method)] >> endobj 3142 0 obj << /Names [(Rfn.ShortRead,DNAStringSet,missing.Rdash.method) 1446 0 R (Rfn.ShortRead,missing,missing.Rdash.method) 1447 0 R (Rfn.ShortRead.Rdash.class) 553 0 R (Rfn.ShortRead.Rdash.class.1) 162 0 R (Rfn.ShortRead.Rdash.deprecated) 1496 0 R (Rfn.ShortRead.Rdash.deprecated.1) 166 0 R] /Limits [(Rfn.ShortRead,DNAStringSet,missing.Rdash.method) (Rfn.ShortRead.Rdash.deprecated.1)] >> endobj 3143 0 obj << /Names [(Rfn.ShortReadBase.Rdash.package) 398 0 R (Rfn.ShortReadBase.Rdash.package.1) 2 0 R (Rfn.ShortReadFile.Rdash.class) 748 0 R (Rfn.ShortReadQ) 984 0 R (Rfn.ShortReadQ,DNAStringSet,BStringSet,BStringSet.Rdash.method) 1522 0 R (Rfn.ShortReadQ,DNAStringSet,BStringSet,missing.Rdash.method) 1523 0 R] /Limits [(Rfn.ShortReadBase.Rdash.package) (Rfn.ShortReadQ,DNAStringSet,BStringSet,missing.Rdash.method)] >> endobj 3144 0 obj << /Names [(Rfn.ShortReadQ,DNAStringSet,QualityScore,BStringSet.Rdash.method) 1524 0 R (Rfn.ShortReadQ,DNAStringSet,QualityScore,missing.Rdash.method) 1525 0 R (Rfn.ShortReadQ,missing,missing,missing.Rdash.method) 1526 0 R (Rfn.ShortReadQ.Rdash.class) 467 0 R (Rfn.ShortReadQ.Rdash.class.1) 170 0 R (Rfn.ShortReadQA.Rdash.class) 1570 0 R] /Limits [(Rfn.ShortReadQ,DNAStringSet,QualityScore,BStringSet.Rdash.method) (Rfn.ShortReadQA.Rdash.class)] >> endobj 3145 0 obj << /Names [(Rfn.ShortReadQA.Rdash.class.1) 174 0 R (Rfn.ShortReadQQA.Rdash.class) 1557 0 R (Rfn.Snapshot) 1605 0 R (Rfn.Snapshot,BamFileList,GRanges.Rdash.method) 1606 0 R (Rfn.Snapshot,character,GRanges.Rdash.method) 1607 0 R (Rfn.Snapshot,character,missing.Rdash.method) 1608 0 R] /Limits [(Rfn.ShortReadQA.Rdash.class.1) (Rfn.Snapshot,character,missing.Rdash.method)] >> endobj 3146 0 obj << /Names [(Rfn.Snapshot.Rdash.class) 1589 0 R (Rfn.Snapshot.Rdash.class.1) 178 0 R (Rfn.SnapshotFunction) 1663 0 R (Rfn.SnapshotFunction.Rdash.class) 1659 0 R (Rfn.SnapshotFunction.Rdash.class.1) 182 0 R (Rfn.SnapshotFunctionList) 1625 0 R] /Limits [(Rfn.Snapshot.Rdash.class) (Rfn.SnapshotFunctionList)] >> endobj 3147 0 obj << /Names [(Rfn.SnapshotFunctionList,ANY.Rdash.method) 1664 0 R (Rfn.SnapshotFunctionList,SnapshotFunction.Rdash.method) 1665 0 R (Rfn.SnapshotFunctionList.Rdash.class) 1666 0 R (Rfn.SolexaExportQA) 1691 0 R (Rfn.SolexaExportQA.Rdash.class) 879 0 R (Rfn.SolexaExportQA.Rdash.class.1) 186 0 R] /Limits [(Rfn.SnapshotFunctionList,ANY.Rdash.method) (Rfn.SolexaExportQA.Rdash.class.1)] >> endobj 3148 0 obj << /Names [(Rfn.SolexaIntensity) 818 0 R (Rfn.SolexaIntensity.1) 190 0 R (Rfn.SolexaIntensity.Rdash.class) 817 0 R (Rfn.SolexaIntensity.Rdash.class.1) 194 0 R (Rfn.SolexaIntensityInfo) 1708 0 R (Rfn.SolexaIntensityInfo.Rdash.class) 1712 0 R] /Limits [(Rfn.SolexaIntensity) (Rfn.SolexaIntensityInfo.Rdash.class)] >> endobj 3149 0 obj << /Names [(Rfn.SolexaPath) 859 0 R (Rfn.SolexaPath.Rdash.class) 707 0 R (Rfn.SolexaPath.Rdash.class.1) 198 0 R (Rfn.SolexaRealignQA.Rdash.class) 1692 0 R (Rfn.SolexaSet) 1802 0 R (Rfn.SolexaSet,SolexaPath.Rdash.method) 1760 0 R] /Limits [(Rfn.SolexaPath) (Rfn.SolexaSet,SolexaPath.Rdash.method)] >> endobj 3150 0 obj << /Names [(Rfn.SolexaSet,character.Rdash.method) 1803 0 R (Rfn.SolexaSet.Rdash.class) 1127 0 R (Rfn.SolexaSet.Rdash.class.1) 202 0 R (Rfn.SpTrellis) 1643 0 R (Rfn.SpTrellis.Rdash.class) 1825 0 R (Rfn.SpTrellis.Rdash.class.1) 206 0 R] /Limits [(Rfn.SolexaSet,character.Rdash.method) (Rfn.SpTrellis.Rdash.class.1)] >> endobj 3151 0 obj << /Names [(Rfn.Utilites) 2148 0 R (Rfn.Utilites.1) 254 0 R (Rfn.Versioned) 492 0 R (Rfn.XStringSet) 592 0 R (Rfn.[,AlignedRead,ANY,ANY,ANY.Rdash.method) 541 0 R (Rfn.[,AlignedRead,ANY,ANY.Rdash.method) 542 0 R] /Limits [(Rfn.Utilites) (Rfn.[,AlignedRead,ANY,ANY.Rdash.method)] >> endobj 3152 0 obj << /Names [(Rfn.[,AlignedRead,ANY,missing,ANY.Rdash.method) 543 0 R (Rfn.[,AlignedRead,ANY,missing.Rdash.method) 544 0 R (Rfn.[,AlignedRead,missing,ANY,ANY.Rdash.method) 545 0 R (Rfn.[,AlignedRead,missing,ANY.Rdash.method) 546 0 R (Rfn.[,AlignedRead,missing,missing,ANY.Rdash.method) 547 0 R (Rfn.[,AlignedRead,missing,missing.Rdash.method) 548 0 R] /Limits [(Rfn.[,AlignedRead,ANY,missing,ANY.Rdash.method) (Rfn.[,AlignedRead,missing,missing.Rdash.method)] >> endobj 3153 0 obj << /Names [(Rfn.[,IntensityMeasure,ANY,ANY,ANY.Rdash.method) 806 0 R (Rfn.[,IntensityMeasure,ANY,ANY.Rdash.method) 807 0 R (Rfn.[,IntensityMeasure,ANY,missing,ANY.Rdash.method) 808 0 R (Rfn.[,IntensityMeasure,missing,ANY,ANY.Rdash.method) 809 0 R (Rfn.[,IntensityMeasure,missing,missing,ANY.Rdash.method) 810 0 R (Rfn.[,MatrixQuality,ANY,missing,ANY.Rdash.method) 1074 0 R] /Limits [(Rfn.[,IntensityMeasure,ANY,ANY,ANY.Rdash.method) (Rfn.[,MatrixQuality,ANY,missing,ANY.Rdash.method)] >> endobj 3154 0 obj << /Names [(Rfn.[,MatrixQuality,ANY,missing.Rdash.method) 1075 0 R (Rfn.[,QualityScore,ANY,missing,ANY.Rdash.method) 1076 0 R (Rfn.[,QualityScore,ANY,missing.Rdash.method) 1077 0 R (Rfn.[,SRList,ANY,missing,ANY.Rdash.method) 2078 0 R (Rfn.[,SRList,ANY,missing.Rdash.method) 2079 0 R (Rfn.[,ShortRead,ANY,ANY,ANY.Rdash.method) 1458 0 R] /Limits [(Rfn.[,MatrixQuality,ANY,missing.Rdash.method) (Rfn.[,ShortRead,ANY,ANY,ANY.Rdash.method)] >> endobj 3155 0 obj << /Names [(Rfn.[,ShortRead,ANY,ANY.Rdash.method) 1459 0 R (Rfn.[,ShortRead,ANY,missing,ANY.Rdash.method) 1460 0 R (Rfn.[,ShortRead,ANY,missing.Rdash.method) 1461 0 R (Rfn.[,ShortRead,missing,ANY,ANY.Rdash.method) 1462 0 R (Rfn.[,ShortRead,missing,ANY.Rdash.method) 1463 0 R (Rfn.[,ShortRead,missing,missing,ANY.Rdash.method) 1464 0 R] /Limits [(Rfn.[,ShortRead,ANY,ANY.Rdash.method) (Rfn.[,ShortRead,missing,missing,ANY.Rdash.method)] >> endobj 3156 0 obj << /Names [(Rfn.[,ShortRead,missing,missing.Rdash.method) 1465 0 R (Rfn.[,ShortReadQ,ANY,ANY,ANY.Rdash.method) 1531 0 R (Rfn.[,ShortReadQ,ANY,ANY.Rdash.method) 1532 0 R (Rfn.[,ShortReadQ,ANY,missing,ANY.Rdash.method) 1533 0 R (Rfn.[,ShortReadQ,ANY,missing.Rdash.method) 1534 0 R (Rfn.[,ShortReadQ,missing,ANY,ANY.Rdash.method) 1535 0 R] /Limits [(Rfn.[,ShortRead,missing,missing.Rdash.method) (Rfn.[,ShortReadQ,missing,ANY,ANY.Rdash.method)] >> endobj 3157 0 obj << /Names [(Rfn.[,ShortReadQ,missing,ANY.Rdash.method) 1536 0 R (Rfn.[,ShortReadQ,missing,missing,ANY.Rdash.method) 1537 0 R (Rfn.[,ShortReadQ,missing,missing.Rdash.method) 1538 0 R (Rfn.[,SolexaIntensity,ANY,ANY,ANY.Rdash.method) 1724 0 R (Rfn.[,SolexaIntensity,ANY,ANY.Rdash.method) 1725 0 R (Rfn.[,SolexaIntensity,ANY,missing,ANY.Rdash.method) 1726 0 R] /Limits [(Rfn.[,ShortReadQ,missing,ANY.Rdash.method) (Rfn.[,SolexaIntensity,ANY,missing,ANY.Rdash.method)] >> endobj 3158 0 obj << /Names [(Rfn.[,SolexaIntensity,missing,ANY,ANY.Rdash.method) 1727 0 R (Rfn.[,SolexaIntensity,missing,missing,ANY.Rdash.method) 1728 0 R (Rfn.[[,ArrayIntensity,ANY,ANY.Rdash.method) 811 0 R (Rfn.[[,MatrixQuality,ANY,missing.Rdash.method) 1078 0 R (Rfn.[[,QualityScore,ANY,missing.Rdash.method) 1079 0 R (Rfn.[[,SRList,ANY,missing.Rdash.method) 2080 0 R] /Limits [(Rfn.[,SolexaIntensity,missing,ANY,ANY.Rdash.method) (Rfn.[[,SRList,ANY,missing.Rdash.method)] >> endobj 3159 0 obj << /Names [(Rfn.accessors) 436 0 R (Rfn.accessors.1) 10 0 R (Rfn.alignData) 437 0 R (Rfn.alignDataFilter) 1920 0 R (Rfn.alignQuality) 438 0 R (Rfn.alignQualityFilter) 1921 0 R] /Limits [(Rfn.accessors) (Rfn.alignQualityFilter)] >> endobj 3160 0 obj << /Names [(Rfn.alphabet,FastqQuality.Rdash.method) 1035 0 R (Rfn.alphabetByCycle) 576 0 R (Rfn.alphabetByCycle,BStringSet.Rdash.method) 577 0 R (Rfn.alphabetByCycle,FastqQuality.Rdash.method) 1036 0 R (Rfn.alphabetByCycle,ShortRead.Rdash.method) 1437 0 R (Rfn.alphabetByCycle,ShortReadQ.Rdash.method) 1513 0 R] /Limits [(Rfn.alphabet,FastqQuality.Rdash.method) (Rfn.alphabetByCycle,ShortReadQ.Rdash.method)] >> endobj 3161 0 obj << /Names [(Rfn.alphabetByCycle.1) 30 0 R (Rfn.alphabetFrequency) 1103 0 R (Rfn.alphabetFrequency,FastqQuality.Rdash.method) 1037 0 R (Rfn.alphabetScore) 604 0 R (Rfn.alphabetScore,FastqQuality.Rdash.method) 1038 0 R (Rfn.alphabetScore,PhredQuality.Rdash.method) 1039 0 R] /Limits [(Rfn.alphabetByCycle.1) (Rfn.alphabetScore,PhredQuality.Rdash.method)] >> endobj 3162 0 obj << /Names [(Rfn.alphabetScore,SFastqQuality.Rdash.method) 1040 0 R (Rfn.alphabetScore,ShortReadQ.Rdash.method) 1514 0 R (Rfn.alphabetScore.1) 34 0 R (Rfn.analysisPath) 439 0 R (Rfn.annTrack) 1590 0 R (Rfn.annTrack,Snapshot.Rdash.method) 1591 0 R] /Limits [(Rfn.alphabetScore,SFastqQuality.Rdash.method) (Rfn.annTrack,Snapshot.Rdash.method)] >> endobj 3163 0 obj << /Names [(Rfn.append,.ShortReadBase,.ShortReadBase.Rdash.method) 403 0 R (Rfn.append,AlignedDataFrame,AlignedDataFrame.Rdash.method) 485 0 R (Rfn.append,AlignedRead,AlignedRead.Rdash.method) 525 0 R (Rfn.append,MatrixQuality,MatrixQuality.Rdash.method) 1041 0 R (Rfn.append,QualityScore,QualityScore.Rdash.method) 1042 0 R (Rfn.append,ShortRead,ShortRead.Rdash.method) 1438 0 R] /Limits [(Rfn.append,.ShortReadBase,.ShortReadBase.Rdash.method) (Rfn.append,ShortRead,ShortRead.Rdash.method)] >> endobj 3164 0 obj << /Names [(Rfn.append,ShortReadQ,ShortReadQ.Rdash.method) 1515 0 R (Rfn.atomic) 2029 0 R (Rfn.baseCallPath) 440 0 R (Rfn.basePath) 678 0 R (Rfn.c,SRFilter.Rdash.method) 1975 0 R (Rfn.chromosome) 441 0 R] /Limits [(Rfn.append,ShortReadQ,ShortReadQ.Rdash.method) (Rfn.chromosome)] >> endobj 3165 0 obj << /Names [(Rfn.chromosome,AlignedRead.Rdash.method) 526 0 R (Rfn.chromosomeFilter) 1922 0 R (Rfn.clean) 650 0 R (Rfn.clean,DNAStringSet.Rdash.method) 651 0 R (Rfn.clean,ShortRead.Rdash.method) 1439 0 R (Rfn.clean.1) 46 0 R] /Limits [(Rfn.chromosome,AlignedRead.Rdash.method) (Rfn.clean.1)] >> endobj 3166 0 obj << /Names [(Rfn.close.ShortReadFile) 724 0 R (Rfn.coerce,AlignedRead,GAlignments.Rdash.method) 527 0 R (Rfn.coerce,AlignedRead,GRanges.Rdash.method) 529 0 R (Rfn.coerce,AlignedRead,GappedReads.Rdash.method) 528 0 R (Rfn.coerce,AlignedRead,RangedData.Rdash.method) 530 0 R (Rfn.coerce,AlignedRead,RangesList.Rdash.method) 531 0 R] /Limits [(Rfn.close.ShortReadFile) (Rfn.coerce,AlignedRead,RangesList.Rdash.method)] >> endobj 3167 0 obj << /Names [(Rfn.coerce,FastqQuality,PhredQuality.Rdash.method) 1045 0 R (Rfn.coerce,FastqQuality,matrix.Rdash.method) 1043 0 R (Rfn.coerce,FastqQuality,numeric.Rdash.method) 1044 0 R (Rfn.coerce,PairwiseAlignments,AlignedRead.Rdash.method) 532 0 R (Rfn.coerce,SFastqQuality,SolexaQuality.Rdash.method) 1047 0 R (Rfn.coerce,SFastqQuality,matrix.Rdash.method) 1046 0 R] /Limits [(Rfn.coerce,FastqQuality,PhredQuality.Rdash.method) (Rfn.coerce,SFastqQuality,matrix.Rdash.method)] >> endobj 3168 0 obj << /Names [(Rfn.coerce,SRFilter,FilterRules.Rdash.method) 1976 0 R (Rfn.coerce,ShortReadQ,QualityScaledDNAStringSet.Rdash.method) 1516 0 R (Rfn.compose) 1923 0 R (Rfn.countLines) 664 0 R (Rfn.countLines.1) 50 0 R (Rfn.coverage) 1185 0 R] /Limits [(Rfn.coerce,SRFilter,FilterRules.Rdash.method) (Rfn.coverage)] >> endobj 3169 0 obj << /Names [(Rfn.coverage,AlignedRead.Rdash.method) 533 0 R (Rfn.data.frame) 1675 0 R (Rfn.dataPath) 442 0 R (Rfn.defunct) 679 0 R (Rfn.deprecated) 677 0 R (Rfn.deprecated.1) 54 0 R] /Limits [(Rfn.coverage,AlignedRead.Rdash.method) (Rfn.deprecated.1)] >> endobj 3170 0 obj << /Names [(Rfn.detail,.ShortReadBase.Rdash.method) 2059 0 R (Rfn.detail,AlignedRead.Rdash.method) 534 0 R (Rfn.detail,ExperimentPath.Rdash.method) 703 0 R (Rfn.detail,QualityScore.Rdash.method) 1048 0 R (Rfn.detail,RochePath.Rdash.method) 1336 0 R (Rfn.detail,SRList.Rdash.method) 2060 0 R] /Limits [(Rfn.detail,.ShortReadBase.Rdash.method) (Rfn.detail,SRList.Rdash.method)] >> endobj 3171 0 obj << /Names [(Rfn.detail,SRSet.Rdash.method) 2037 0 R (Rfn.detail,SRVector.Rdash.method) 2061 0 R (Rfn.detail,ShortRead.Rdash.method) 1440 0 R (Rfn.detail,ShortReadQ.Rdash.method) 1517 0 R (Rfn.detail,SolexaPath.Rdash.method) 1749 0 R (Rfn.detail,SolexaSet.Rdash.method) 1797 0 R] /Limits [(Rfn.detail,SRSet.Rdash.method) (Rfn.detail,SolexaSet.Rdash.method)] >> endobj 3172 0 obj << /Names [(Rfn.dim,Intensity.Rdash.method) 798 0 R (Rfn.dim,MatrixQuality.Rdash.method) 1049 0 R (Rfn.dustyFilter) 1924 0 R (Rfn.dustyScore) 683 0 R (Rfn.dustyScore,DNAStringSet.Rdash.method) 684 0 R (Rfn.dustyScore,ShortRead.Rdash.method) 685 0 R] /Limits [(Rfn.dim,Intensity.Rdash.method) (Rfn.dustyScore,ShortRead.Rdash.method)] >> endobj 3173 0 obj << /Names [(Rfn.dustyScore.1) 58 0 R (Rfn.encoding,FastqQuality.Rdash.method) 1050 0 R (Rfn.encoding,SFastqQuality.Rdash.method) 1051 0 R (Rfn.experimentPath) 443 0 R (Rfn.experimentPath,SRSet.Rdash.method) 2038 0 R (Rfn.fac) 1592 0 R] /Limits [(Rfn.dustyScore.1) (Rfn.fac)] >> endobj 3174 0 obj << /Names [(Rfn.fac,Snapshot.Rdash.method) 1593 0 R (Rfn.files) 1594 0 R (Rfn.files,Snapshot.Rdash.method) 1595 0 R (Rfn.filterFastq) 777 0 R (Rfn.filterFastq.1) 70 0 R (Rfn.flag) 934 0 R] /Limits [(Rfn.fac,Snapshot.Rdash.method) (Rfn.flag)] >> endobj 3175 0 obj << /Names [(Rfn.flag,.QA2.Rdash.method) 935 0 R (Rfn.flag,QAFrequentSequence.Rdash.method) 936 0 R (Rfn.flag,QAReadQuality.Rdash.method) 937 0 R (Rfn.flag,QASource.Rdash.method) 938 0 R (Rfn.function) 1674 0 R (Rfn.function.Rdash.class) 1986 0 R] /Limits [(Rfn.flag,.QA2.Rdash.method) (Rfn.function.Rdash.class)] >> endobj 3176 0 obj << /Names [(Rfn.functions) 1596 0 R (Rfn.functions,Snapshot.Rdash.method) 1597 0 R (Rfn.getTrellis) 1598 0 R (Rfn.getTrellis,Snapshot.Rdash.method) 1599 0 R (Rfn.grep) 671 0 R (Rfn.id) 444 0 R] /Limits [(Rfn.functions) (Rfn.id)] >> endobj 3177 0 obj << /Names [(Rfn.id,ShortRead.Rdash.method) 1441 0 R (Rfn.idFilter) 1925 0 R (Rfn.ignore.strand) 1600 0 R (Rfn.ignore.strand,Snapshot.Rdash.method) 1601 0 R (Rfn.imageAnalysisPath) 445 0 R (Rfn.intensity) 799 0 R] /Limits [(Rfn.id,ShortRead.Rdash.method) (Rfn.intensity)] >> endobj 3178 0 obj << /Names [(Rfn.is) 2084 0 R (Rfn.laneDescription) 446 0 R (Rfn.laneNames) 447 0 R (Rfn.laneNames,AnnotatedDataFrame.Rdash.method) 1798 0 R (Rfn.laneNames,SolexaSet.Rdash.method) 1799 0 R (Rfn.lapply) 2093 0 R] /Limits [(Rfn.is) (Rfn.lapply)] >> endobj 3179 0 obj << /Names [(Rfn.lapply,SRList,ANY.Rdash.method) 2062 0 R (Rfn.lapply,SRList.Rdash.method) 2063 0 R (Rfn.left,SpTrellis.Rdash.method) 1826 0 R (Rfn.length,MatrixQuality.Rdash.method) 1054 0 R (Rfn.length,QualityScore.Rdash.method) 1055 0 R (Rfn.length,SRList.Rdash.method) 2064 0 R] /Limits [(Rfn.lapply,SRList,ANY.Rdash.method) (Rfn.length,SRList.Rdash.method)] >> endobj 3180 0 obj << /Names [(Rfn.length,ShortRead.Rdash.method) 1442 0 R (Rfn.limits) 1660 0 R (Rfn.list.files) 672 0 R (Rfn.logical.Rdash.class) 2027 0 R (Rfn.matchPattern) 985 0 R (Rfn.measurementError) 802 0 R] /Limits [(Rfn.length,ShortRead.Rdash.method) (Rfn.measurementError)] >> endobj 3181 0 obj << /Names [(Rfn.nFilter) 1926 0 R (Rfn.name) 1977 0 R (Rfn.name,SRFilter.Rdash.method) 1978 0 R (Rfn.name,SRFilterResult.Rdash.method) 2001 0 R (Rfn.names,SRList.Rdash.method) 2065 0 R (Rfn.names<.Rdash.,SRList,character.Rdash.method) 2066 0 R] /Limits [(Rfn.nFilter) (Rfn.names<.Rdash.,SRList,character.Rdash.method)] >> endobj 3182 0 obj << /Names [(Rfn.narrow) 1104 0 R (Rfn.narrow,FastqQuality.Rdash.method) 1057 0 R (Rfn.narrow,MatrixQuality.Rdash.method) 1058 0 R (Rfn.narrow,ShortRead.Rdash.method) 1443 0 R (Rfn.narrow,ShortReadQ.Rdash.method) 1518 0 R (Rfn.occurrenceFilter) 1927 0 R] /Limits [(Rfn.narrow) (Rfn.occurrenceFilter)] >> endobj 3183 0 obj << /Names [(Rfn.open.ShortReadFile) 746 0 R (Rfn.overlap) 568 0 R (Rfn.pairwiseAlignment) 1882 0 R (Rfn.pan) 1602 0 R (Rfn.pan,Snapshot.Rdash.method) 1603 0 R (Rfn.phenoData,SRSet.Rdash.method) 2039 0 R] /Limits [(Rfn.open.ShortReadFile) (Rfn.phenoData,SRSet.Rdash.method)] >> endobj 3184 0 obj << /Names [(Rfn.phenoData.Rdash.class) 2050 0 R (Rfn.polyn) 2149 0 R (Rfn.polynFilter) 1928 0 R (Rfn.position) 448 0 R (Rfn.position,AlignedRead.Rdash.method) 535 0 R (Rfn.positionFilter) 1929 0 R] /Limits [(Rfn.phenoData.Rdash.class) (Rfn.positionFilter)] >> endobj 3185 0 obj << /Names [(Rfn.qa) 427 0 R (Rfn.qa,ShortReadQ.Rdash.method) 1519 0 R (Rfn.qa,SolexaPath.Rdash.method) 1750 0 R (Rfn.qa,character.Rdash.method) 852 0 R (Rfn.qa,list.Rdash.method) 853 0 R (Rfn.qa.1) 82 0 R] /Limits [(Rfn.qa) (Rfn.qa.1)] >> endobj 3186 0 obj << /Names [(Rfn.qa2) 917 0 R (Rfn.qa2,FastqSampler.Rdash.method) 940 0 R (Rfn.qa2,QAAdapterContamination.Rdash.method) 941 0 R (Rfn.qa2,QACollate.Rdash.method) 942 0 R (Rfn.qa2,QAFastqSource.Rdash.method) 943 0 R (Rfn.qa2,QAFrequentSequence.Rdash.method) 944 0 R] /Limits [(Rfn.qa2) (Rfn.qa2,QAFrequentSequence.Rdash.method)] >> endobj 3187 0 obj << /Names [(Rfn.qa2,QANucleotideByCycle.Rdash.method) 945 0 R (Rfn.qa2,QANucleotideUse.Rdash.method) 946 0 R (Rfn.qa2,QAQualityByCycle.Rdash.method) 947 0 R (Rfn.qa2,QAQualityUse.Rdash.method) 948 0 R (Rfn.qa2,QAReadQuality.Rdash.method) 949 0 R (Rfn.qa2,QASequenceUse.Rdash.method) 950 0 R] /Limits [(Rfn.qa2,QANucleotideByCycle.Rdash.method) (Rfn.qa2,QASequenceUse.Rdash.method)] >> endobj 3188 0 obj << /Names [(Rfn.qa2.1) 90 0 R (Rfn.qualPath) 1337 0 R (Rfn.rank) 1914 0 R (Rfn.rbind) 995 0 R (Rfn.rbind,.QA.Rdash.method) 410 0 R (Rfn.rbind,QASummary.Rdash.method) 956 0 R] /Limits [(Rfn.qa2.1) (Rfn.rbind,QASummary.Rdash.method)] >> endobj 3189 0 obj << /Names [(Rfn.read454) 1338 0 R (Rfn.read454,RochePath.Rdash.method) 1339 0 R (Rfn.readAligned) 508 0 R (Rfn.readAligned,SolexaPath.Rdash.method) 1751 0 R (Rfn.readAligned,SolexaSet.Rdash.method) 1800 0 R (Rfn.readAligned,character.Rdash.method) 1114 0 R] /Limits [(Rfn.read454) (Rfn.readAligned,character.Rdash.method)] >> endobj 3190 0 obj << /Names [(Rfn.readAligned.1) 102 0 R (Rfn.readBaseQuality) 1162 0 R (Rfn.readBaseQuality,RochePath.Rdash.method) 1340 0 R (Rfn.readBaseQuality,SolexaPath.Rdash.method) 1752 0 R (Rfn.readBaseQuality,character.Rdash.method) 1163 0 R (Rfn.readBaseQuality.1) 106 0 R] /Limits [(Rfn.readAligned.1) (Rfn.readBaseQuality.1)] >> endobj 3191 0 obj << /Names [(Rfn.readBfaToc) 1178 0 R (Rfn.readBfaToc.1) 110 0 R (Rfn.readCount) 2040 0 R (Rfn.readData) 2041 0 R (Rfn.readFasta) 1193 0 R (Rfn.readFasta,RochePath.Rdash.method) 1341 0 R] /Limits [(Rfn.readBfaToc) (Rfn.readFasta,RochePath.Rdash.method)] >> endobj 3192 0 obj << /Names [(Rfn.readFasta,SolexaPath.Rdash.method) 1753 0 R (Rfn.readFasta,character.Rdash.method) 1194 0 R (Rfn.readFasta.1) 114 0 R (Rfn.readFastaQual) 1342 0 R (Rfn.readFastaQual,RochePath.Rdash.method) 1344 0 R (Rfn.readFastaQual,character.Rdash.method) 1343 0 R] /Limits [(Rfn.readFasta,SolexaPath.Rdash.method) (Rfn.readFastaQual,character.Rdash.method)] >> endobj 3193 0 obj << /Names [(Rfn.readFastq) 771 0 R (Rfn.readFastq,FastqFile.Rdash.method) 747 0 R (Rfn.readFastq,SolexaPath.Rdash.method) 1754 0 R (Rfn.readFastq,character.Rdash.method) 1209 0 R (Rfn.readFastq.1) 118 0 R (Rfn.readIndex) 2042 0 R] /Limits [(Rfn.readFastq) (Rfn.readIndex)] >> endobj 3194 0 obj << /Names [(Rfn.readInfo) 803 0 R (Rfn.readIntensities) 819 0 R (Rfn.readIntensities,SolexaPath.Rdash.method) 1755 0 R (Rfn.readIntensities,character.Rdash.method) 1237 0 R (Rfn.readIntensities.1) 122 0 R (Rfn.readIntensities\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\protect\040\\relax\040\\kern\040.16667em\040character.Rdash.method) 1776 0 R] /Limits [(Rfn.readInfo) (Rfn.readIntensities\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\protect\040\\relax\040\\kern\040.16667em\040character.Rdash.method)] >> endobj 3195 0 obj << /Names [(Rfn.readPath) 1345 0 R (Rfn.readPrb) 1184 0 R (Rfn.readPrb,SolexaPath.Rdash.method) 1756 0 R (Rfn.readPrb,character.Rdash.method) 1249 0 R (Rfn.readPrb.1) 126 0 R (Rfn.readPrb\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\protect\040\\relax\040\\kern\040.16667em\040character.Rdash.method) 1787 0 R] /Limits [(Rfn.readPath) (Rfn.readPrb\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\protect\040\\relax\040\\kern\040.16667em\040character.Rdash.method)] >> endobj 3196 0 obj << /Names [(Rfn.readQseq) 1269 0 R (Rfn.readQseq,SolexaPath.Rdash.method) 1757 0 R (Rfn.readQseq,character.Rdash.method) 1270 0 R (Rfn.readQseq.1) 130 0 R (Rfn.readQseq\\unhbox\040\\voidb@x\040\\kern\040\\z@\040\\char\040`\\protect\040\\relax\040\\kern\040.16667em\040character.Rdash.method) 1788 0 R (Rfn.readQual) 1346 0 R] /Limits [(Rfn.readQseq) (Rfn.readQual)] >> endobj 3197 0 obj << /Names [(Rfn.readQual,RochePath.Rdash.method) 1348 0 R (Rfn.readQual,character.Rdash.method) 1347 0 R (Rfn.readXStringColumns) 1135 0 R (Rfn.readXStringColumns.1) 134 0 R (Rfn.reader) 1661 0 R (Rfn.renew) 1292 0 R] /Limits [(Rfn.readQual,RochePath.Rdash.method) (Rfn.renew)] >> endobj 3198 0 obj << /Names [(Rfn.renew,.ShortReadBase.Rdash.method) 1293 0 R (Rfn.renewable) 1291 0 R (Rfn.renewable,.ShortReadBase.Rdash.method) 1294 0 R (Rfn.renewable,character.Rdash.method) 1295 0 R (Rfn.renewable,missing.Rdash.method) 1296 0 R (Rfn.renewable.1) 138 0 R] /Limits [(Rfn.renew,.ShortReadBase.Rdash.method) (Rfn.renewable.1)] >> endobj 3199 0 obj << /Names [(Rfn.report) 858 0 R (Rfn.report,ANY.Rdash.method) 1320 0 R (Rfn.report,BAMQA.Rdash.method) 611 0 R (Rfn.report,BowtieQA.Rdash.method) 633 0 R (Rfn.report,FastqQA.Rdash.method) 1572 0 R (Rfn.report,MAQMapQA.Rdash.method) 835 0 R] /Limits [(Rfn.report) (Rfn.report,MAQMapQA.Rdash.method)] >> endobj 3200 0 obj << /Names [(Rfn.report,QA.Rdash.method) 957 0 R (Rfn.report,QAAdapterContamination.Rdash.method) 958 0 R (Rfn.report,QAFiltered.Rdash.method) 959 0 R (Rfn.report,QAFlagged.Rdash.method) 960 0 R (Rfn.report,QAFrequentSequence.Rdash.method) 961 0 R (Rfn.report,QANucleotideByCycle.Rdash.method) 962 0 R] /Limits [(Rfn.report,QA.Rdash.method) (Rfn.report,QANucleotideByCycle.Rdash.method)] >> endobj 3201 0 obj << /Names [(Rfn.report,QANucleotideUse.Rdash.method) 963 0 R (Rfn.report,QAQualityByCycle.Rdash.method) 964 0 R (Rfn.report,QAQualityUse.Rdash.method) 965 0 R (Rfn.report,QAReadQuality.Rdash.method) 966 0 R (Rfn.report,QASequenceUse.Rdash.method) 967 0 R (Rfn.report,QASource.Rdash.method) 968 0 R] /Limits [(Rfn.report,QANucleotideUse.Rdash.method) (Rfn.report,QASource.Rdash.method)] >> endobj 3202 0 obj << /Names [(Rfn.report,SolexaExportQA.Rdash.method) 1687 0 R (Rfn.report,SolexaPath.Rdash.method) 1758 0 R (Rfn.report.1) 142 0 R (Rfn.report.Rul.html) 1321 0 R (Rfn.report.Rul.html,BAMQA.Rdash.method) 612 0 R (Rfn.report.Rul.html,BowtieQA.Rdash.method) 634 0 R] /Limits [(Rfn.report,SolexaExportQA.Rdash.method) (Rfn.report.Rul.html,BowtieQA.Rdash.method)] >> endobj 3203 0 obj << /Names [(Rfn.report.Rul.html,FastqQA.Rdash.method) 1573 0 R (Rfn.report.Rul.html,MAQMapQA.Rdash.method) 836 0 R (Rfn.report.Rul.html,ShortReadQQA.Rdash.method) 1574 0 R (Rfn.report.Rul.html,SolexaExportQA.Rdash.method) 1688 0 R (Rfn.report.Rul.html,SolexaRealignQA.Rdash.method) 1689 0 R (Rfn.restore) 1827 0 R] /Limits [(Rfn.report.Rul.html,FastqQA.Rdash.method) (Rfn.restore)] >> endobj 3204 0 obj << /Names [(Rfn.restore,SpTrellis.Rdash.method) 1828 0 R (Rfn.reverse,FastqQuality.Rdash.method) 1060 0 R (Rfn.reverse,ShortReadQ.Rdash.method) 1520 0 R (Rfn.reverseComplement,ShortReadQ.Rdash.method) 1521 0 R (Rfn.right,SpTrellis.Rdash.method) 1829 0 R (Rfn.runNames) 1352 0 R] /Limits [(Rfn.restore,SpTrellis.Rdash.method) (Rfn.runNames)] >> endobj 3205 0 obj << /Names [(Rfn.runNames,RochePath.Rdash.method) 1353 0 R (Rfn.sapply) 2094 0 R (Rfn.sapply,SRList.Rdash.method) 2067 0 R (Rfn.scanPath) 449 0 R (Rfn.show,.QA.Rdash.method) 411 0 R (Rfn.show,.ShortReadBase.Rdash.method) 404 0 R] /Limits [(Rfn.runNames,RochePath.Rdash.method) (Rfn.show,.ShortReadBase.Rdash.method)] >> endobj 3206 0 obj << /Names [(Rfn.show,AlignedRead.Rdash.method) 536 0 R (Rfn.show,ExperimentPath.Rdash.method) 705 0 R (Rfn.show,FastqQuality.Rdash.method) 1062 0 R (Rfn.show,Intensity.Rdash.method) 804 0 R (Rfn.show,IntensityMeasure.Rdash.method) 805 0 R (Rfn.show,NumericQuality.Rdash.method) 1063 0 R] /Limits [(Rfn.show,AlignedRead.Rdash.method) (Rfn.show,NumericQuality.Rdash.method)] >> endobj 3207 0 obj << /Names [(Rfn.show,QAAdapterContamination.Rdash.method) 969 0 R (Rfn.show,QACollate.Rdash.method) 970 0 R (Rfn.show,QAFastqSource.Rdash.method) 971 0 R (Rfn.show,QAFrequentSequence.Rdash.method) 972 0 R (Rfn.show,QAReadQuality.Rdash.method) 973 0 R (Rfn.show,QASummary.Rdash.method) 974 0 R] /Limits [(Rfn.show,QAAdapterContamination.Rdash.method) (Rfn.show,QASummary.Rdash.method)] >> endobj 3208 0 obj << /Names [(Rfn.show,RochePath.Rdash.method) 1354 0 R (Rfn.show,SRFilter.Rdash.method) 1979 0 R (Rfn.show,SRFilterResult.Rdash.method) 2002 0 R (Rfn.show,SRList.Rdash.method) 2068 0 R (Rfn.show,SRSet.Rdash.method) 2043 0 R (Rfn.show,SRVector.Rdash.method) 2069 0 R] /Limits [(Rfn.show,RochePath.Rdash.method) (Rfn.show,SRVector.Rdash.method)] >> endobj 3209 0 obj << /Names [(Rfn.show,ShortRead.Rdash.method) 1448 0 R (Rfn.show,Snapshot.Rdash.method) 1604 0 R (Rfn.show,SnapshotFunction.Rdash.method) 1662 0 R (Rfn.show,SolexaExportQA.Rdash.method) 1690 0 R (Rfn.show,SolexaPath.Rdash.method) 1759 0 R (Rfn.show,SolexaSet.Rdash.method) 1801 0 R] /Limits [(Rfn.show,ShortRead.Rdash.method) (Rfn.show,SolexaSet.Rdash.method)] >> endobj 3210 0 obj << /Names [(Rfn.show,SpTrellis.Rdash.method) 1830 0 R (Rfn.solexaPath) 450 0 R (Rfn.sourcePath) 2044 0 R (Rfn.spViewPerFeature) 1846 0 R (Rfn.spViewPerFeature.1) 210 0 R (Rfn.sprintf) 2083 0 R] /Limits [(Rfn.show,SpTrellis.Rdash.method) (Rfn.sprintf)] >> endobj 3211 0 obj << /Names [(Rfn.srFilter) 1221 0 R (Rfn.srFilter,SRFilter.Rdash.method) 1980 0 R (Rfn.srFilter,function.Rdash.method) 1931 0 R (Rfn.srFilter,missing.Rdash.method) 1932 0 R (Rfn.srFilter.1) 226 0 R (Rfn.srapply) 1864 0 R] /Limits [(Rfn.srFilter) (Rfn.srapply)] >> endobj 3212 0 obj << /Names [(Rfn.srapply.1) 214 0 R (Rfn.srdistance) 1484 0 R (Rfn.srdistance,DNAStringSet,DNAString.Rdash.method) 1877 0 R (Rfn.srdistance,DNAStringSet,DNAStringSet.Rdash.method) 1878 0 R (Rfn.srdistance,DNAStringSet,character.Rdash.method) 1876 0 R (Rfn.srdistance,ShortRead,ANY.Rdash.method) 1449 0 R] /Limits [(Rfn.srapply.1) (Rfn.srdistance,ShortRead,ANY.Rdash.method)] >> endobj 3213 0 obj << /Names [(Rfn.srdistance.1) 218 0 R (Rfn.srdistanceFilter) 1930 0 R (Rfn.srduplicated) 1892 0 R (Rfn.srduplicated,AlignedRead.Rdash.method) 537 0 R (Rfn.srduplicated,FastqQuality.Rdash.method) 1064 0 R (Rfn.srduplicated,ShortRead.Rdash.method) 1450 0 R] /Limits [(Rfn.srdistance.1) (Rfn.srduplicated,ShortRead.Rdash.method)] >> endobj 3214 0 obj << /Names [(Rfn.srduplicated,XStringSet.Rdash.method) 1893 0 R (Rfn.srduplicated.1) 222 0 R (Rfn.sread) 451 0 R (Rfn.sread,ShortRead.Rdash.method) 452 0 R (Rfn.srlist) 2073 0 R (Rfn.srorder) 1894 0 R] /Limits [(Rfn.srduplicated,XStringSet.Rdash.method) (Rfn.srorder)] >> endobj 3215 0 obj << /Names [(Rfn.srorder,AlignedRead.Rdash.method) 538 0 R (Rfn.srorder,FastqQuality.Rdash.method) 1065 0 R (Rfn.srorder,ShortRead.Rdash.method) 1451 0 R (Rfn.srorder,XStringSet.Rdash.method) 1895 0 R (Rfn.srrank) 1896 0 R (Rfn.srrank,AlignedRead.Rdash.method) 539 0 R] /Limits [(Rfn.srorder,AlignedRead.Rdash.method) (Rfn.srrank,AlignedRead.Rdash.method)] >> endobj 3216 0 obj << /Names [(Rfn.srrank,FastqQuality.Rdash.method) 1066 0 R (Rfn.srrank,ShortRead.Rdash.method) 1452 0 R (Rfn.srrank,XStringSet.Rdash.method) 1897 0 R (Rfn.srsort) 1105 0 R (Rfn.srsort,FastqQuality.Rdash.method) 1067 0 R (Rfn.srsort,ShortRead.Rdash.method) 1453 0 R] /Limits [(Rfn.srrank,FastqQuality.Rdash.method) (Rfn.srsort,ShortRead.Rdash.method)] >> endobj 3217 0 obj << /Names [(Rfn.srsort,XStringSet.Rdash.method) 1898 0 R (Rfn.stats) 2004 0 R (Rfn.stats,SRFilterResult.Rdash.method) 2005 0 R (Rfn.strand,AlignedRead.Rdash.method) 540 0 R (Rfn.strandFilter) 1933 0 R (Rfn.tables) 1486 0 R] /Limits [(Rfn.srsort,XStringSet.Rdash.method) (Rfn.tables)] >> endobj 3218 0 obj << /Names [(Rfn.tables,ShortRead.Rdash.method) 1454 0 R (Rfn.tables,XStringSet.Rdash.method) 2101 0 R (Rfn.tables.1) 246 0 R (Rfn.tapply) 1952 0 R (Rfn.togglefun) 1609 0 R (Rfn.togglefun,Snapshot.Rdash.method) 1610 0 R] /Limits [(Rfn.tables,ShortRead.Rdash.method) (Rfn.togglefun,Snapshot.Rdash.method)] >> endobj 3219 0 obj << /Names [(Rfn.togglep) 1611 0 R (Rfn.togglep,Snapshot.Rdash.method) 1612 0 R (Rfn.togglez) 1613 0 R (Rfn.togglez,Snapshot.Rdash.method) 1614 0 R (Rfn.trellis.Rdash.class) 1615 0 R (Rfn.trimEnds) 2113 0 R] /Limits [(Rfn.togglep) (Rfn.trimEnds)] >> endobj 3220 0 obj << /Names [(Rfn.trimEnds,FastqQuality.Rdash.method) 2115 0 R (Rfn.trimEnds,ShortRead.Rdash.method) 2116 0 R (Rfn.trimEnds,ShortReadQ.Rdash.method) 2117 0 R (Rfn.trimEnds,XStringQuality.Rdash.method) 2118 0 R (Rfn.trimEnds,XStringSet.Rdash.method) 2119 0 R (Rfn.trimEnds,character.Rdash.method) 2114 0 R] /Limits [(Rfn.trimEnds,FastqQuality.Rdash.method) (Rfn.trimEnds,character.Rdash.method)] >> endobj 3221 0 obj << /Names [(Rfn.trimLRPatterns) 1485 0 R (Rfn.trimLRPatterns,ShortRead.Rdash.method) 1455 0 R (Rfn.trimTails) 2112 0 R (Rfn.trimTails,BStringSet.Rdash.method) 2120 0 R (Rfn.trimTails,FastqQuality.Rdash.method) 1068 0 R (Rfn.trimTails,ShortReadQ.Rdash.method) 1527 0 R] /Limits [(Rfn.trimLRPatterns) (Rfn.trimTails,ShortReadQ.Rdash.method)] >> endobj 3222 0 obj << /Names [(Rfn.trimTails,XStringQuality.Rdash.method) 2122 0 R (Rfn.trimTails,character.Rdash.method) 2121 0 R (Rfn.trimTails.1) 250 0 R (Rfn.trimTailw) 2123 0 R (Rfn.trimTailw,BStringSet.Rdash.method) 2124 0 R (Rfn.trimTailw,FastqQuality.Rdash.method) 1069 0 R] /Limits [(Rfn.trimTails,XStringQuality.Rdash.method) (Rfn.trimTailw,FastqQuality.Rdash.method)] >> endobj 3223 0 obj << /Names [(Rfn.trimTailw,ShortReadQ.Rdash.method) 1528 0 R (Rfn.trimTailw,XStringQuality.Rdash.method) 2126 0 R (Rfn.trimTailw,character.Rdash.method) 2125 0 R (Rfn.uniqueFilter) 1497 0 R (Rfn.vclass) 453 0 R (Rfn.vector.Rdash.class) 2028 0 R] /Limits [(Rfn.trimTailw,ShortReadQ.Rdash.method) (Rfn.vector.Rdash.class)] >> endobj 3224 0 obj << /Names [(Rfn.view) 1616 0 R (Rfn.view,Snapshot.Rdash.method) 1617 0 R (Rfn.viewer) 1667 0 R (Rfn.vrange) 1618 0 R (Rfn.vrange,Snapshot.Rdash.method) 1619 0 R (Rfn.width,FastqQuality.Rdash.method) 1070 0 R] /Limits [(Rfn.view) (Rfn.width,FastqQuality.Rdash.method)] >> endobj 3225 0 obj << /Names [(Rfn.width,MatrixQuality.Rdash.method) 1071 0 R (Rfn.width,NumericQuality.Rdash.method) 1072 0 R (Rfn.width,QualityScore.Rdash.method) 1073 0 R (Rfn.width,ShortRead.Rdash.method) 1456 0 R (Rfn.writeFasta) 1195 0 R (Rfn.writeFasta,DNAStringSet.Rdash.method) 1196 0 R] /Limits [(Rfn.width,MatrixQuality.Rdash.method) (Rfn.writeFasta,DNAStringSet.Rdash.method)] >> endobj 3226 0 obj << /Names [(Rfn.writeFasta,ShortRead.Rdash.method) 1457 0 R (Rfn.writeFastq) 772 0 R (Rfn.writeFastq,ShortReadQ,FastqFile.Rdash.method) 1530 0 R (Rfn.writeFastq,ShortReadQ,character.Rdash.method) 1529 0 R (Rfn.writeXStringSet) 1201 0 R (Rfn.yield) 749 0 R] /Limits [(Rfn.writeFasta,ShortRead.Rdash.method) (Rfn.yield)] >> endobj 3227 0 obj << /Names [(Rfn.yield,FastqFileReader.Rdash.method) 750 0 R (Rfn.yield,FastqSampler.Rdash.method) 751 0 R (Rfn.yield,FastqStreamer.Rdash.method) 752 0 R (Rfn.zi) 1831 0 R (Rfn.zi,SpTrellis.Rdash.method) 1832 0 R (Rfn.zo) 1833 0 R] /Limits [(Rfn.yield,FastqFileReader.Rdash.method) (Rfn.zo)] >> endobj 3228 0 obj << /Names [(Rfn.zo,SpTrellis.Rdash.method) 1834 0 R (Rfn.zoom) 1620 0 R (Rfn.zoom,Snapshot.Rdash.method) 1621 0 R (chapter*.1) 274 0 R (index.0) 258 0 R (page.1) 272 0 R] /Limits [(Rfn.zo,SpTrellis.Rdash.method) (page.1)] >> endobj 3229 0 obj << /Names [(page.10) 338 0 R (page.100) 426 0 R (page.101) 2326 0 R (page.102) 2399 0 R (page.103) 2468 0 R (page.104) 2557 0 R] /Limits [(page.10) (page.104)] >> endobj 3230 0 obj << /Names [(page.105) 2662 0 R (page.106) 2753 0 R (page.107) 2843 0 R (page.108) 2929 0 R (page.109) 3019 0 R (page.11) 584 0 R] /Limits [(page.105) (page.11)] >> endobj 3231 0 obj << /Names [(page.110) 3084 0 R (page.12) 339 0 R (page.13) 340 0 R (page.14) 341 0 R (page.15) 342 0 R (page.16) 343 0 R] /Limits [(page.110) (page.16)] >> endobj 3232 0 obj << /Names [(page.17) 344 0 R (page.18) 712 0 R (page.19) 345 0 R (page.2) 333 0 R (page.20) 766 0 R (page.21) 346 0 R] /Limits [(page.17) (page.21)] >> endobj 3233 0 obj << /Names [(page.22) 782 0 R (page.23) 347 0 R (page.24) 348 0 R (page.25) 349 0 R (page.26) 872 0 R (page.27) 350 0 R] /Limits [(page.22) (page.27)] >> endobj 3234 0 obj << /Names [(page.28) 351 0 R (page.29) 982 0 R (page.3) 281 0 R (page.30) 993 0 R (page.31) 352 0 R (page.32) 353 0 R] /Limits [(page.28) (page.32)] >> endobj 3235 0 obj << /Names [(page.33) 1087 0 R (page.34) 1101 0 R (page.35) 354 0 R (page.36) 1126 0 R (page.37) 1133 0 R (page.38) 1141 0 R] /Limits [(page.33) (page.38)] >> endobj 3236 0 obj << /Names [(page.39) 1151 0 R (page.4) 282 0 R (page.40) 355 0 R (page.41) 356 0 R (page.42) 357 0 R (page.43) 358 0 R] /Limits [(page.39) (page.43)] >> endobj 3237 0 obj << /Names [(page.44) 1218 0 R (page.45) 1227 0 R (page.46) 359 0 R (page.47) 360 0 R (page.48) 1257 0 R (page.49) 361 0 R] /Limits [(page.44) (page.49)] >> endobj 3238 0 obj << /Names [(page.5) 283 0 R (page.50) 362 0 R (page.51) 363 0 R (page.52) 1303 0 R (page.53) 364 0 R (page.54) 365 0 R] /Limits [(page.5) (page.54)] >> endobj 3239 0 obj << /Names [(page.55) 1365 0 R (page.56) 366 0 R (page.57) 367 0 R (page.58) 368 0 R (page.59) 369 0 R (page.6) 335 0 R] /Limits [(page.55) (page.6)] >> endobj 3240 0 obj << /Names [(page.60) 1483 0 R (page.61) 370 0 R (page.62) 371 0 R (page.63) 1554 0 R (page.64) 372 0 R (page.65) 373 0 R] /Limits [(page.60) (page.65)] >> endobj 3241 0 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[(page.93) (page.98)] >> endobj 3247 0 obj << /Names [(page.99) 425 0 R (section*.10) 433 0 R (section*.100) 713 0 R (section*.101) 714 0 R (section*.102) 715 0 R (section*.103) 716 0 R] /Limits [(page.99) (section*.103)] >> endobj 3248 0 obj << /Names [(section*.104) 717 0 R (section*.105) 718 0 R (section*.106) 753 0 R (section*.107) 754 0 R (section*.108) 755 0 R (section*.109) 767 0 R] /Limits [(section*.104) (section*.109)] >> endobj 3249 0 obj << /Names [(section*.11) 434 0 R (section*.110) 768 0 R (section*.111) 769 0 R (section*.112) 770 0 R (section*.113) 776 0 R (section*.114) 783 0 R] /Limits [(section*.11) (section*.114)] >> endobj 3250 0 obj << /Names [(section*.115) 784 0 R (section*.116) 785 0 R (section*.117) 786 0 R (section*.118) 787 0 R (section*.119) 812 0 R (section*.12) 435 0 R] /Limits [(section*.115) (section*.12)] >> endobj 3251 0 obj << /Names [(section*.120) 813 0 R (section*.121) 814 0 R (section*.122) 815 0 R (section*.123) 816 0 R (section*.124) 830 0 R (section*.125) 831 0 R] /Limits [(section*.120) (section*.125)] >> endobj 3252 0 obj << /Names [(section*.126) 832 0 R (section*.127) 837 0 R (section*.128) 838 0 R (section*.129) 839 0 R (section*.13) 454 0 R (section*.130) 840 0 R] /Limits [(section*.126) (section*.130)] >> endobj 3253 0 obj << /Names [(section*.131) 841 0 R (section*.132) 849 0 R (section*.133) 850 0 R (section*.134) 851 0 R (section*.135) 854 0 R (section*.136) 855 0 R] /Limits [(section*.131) (section*.136)] >> endobj 3254 0 obj << /Names [(section*.137) 856 0 R (section*.138) 873 0 R (section*.139) 874 0 R (section*.14) 455 0 R (section*.140) 875 0 R (section*.141) 876 0 R] /Limits [(section*.137) (section*.141)] >> endobj 3255 0 obj << /Names [(section*.142) 877 0 R (section*.143) 913 0 R (section*.144) 914 0 R (section*.145) 915 0 R (section*.146) 916 0 R (section*.147) 931 0 R] /Limits [(section*.142) (section*.147)] >> endobj 3256 0 obj << /Names [(section*.148) 932 0 R (section*.149) 933 0 R (section*.15) 460 0 R (section*.150) 975 0 R (section*.151) 976 0 R (section*.152) 983 0 R] /Limits [(section*.148) (section*.152)] >> endobj 3257 0 obj << /Names [(section*.153) 994 0 R (section*.154) 1003 0 R (section*.155) 1004 0 R (section*.156) 1005 0 R (section*.157) 1006 0 R (section*.158) 1019 0 R] /Limits [(section*.153) (section*.158)] >> endobj 3258 0 obj << /Names [(section*.159) 1020 0 R (section*.16) 461 0 R (section*.160) 1021 0 R (section*.161) 1031 0 R (section*.162) 1032 0 R (section*.163) 1033 0 R] /Limits [(section*.159) (section*.163)] >> endobj 3259 0 obj << /Names [(section*.164) 1034 0 R (section*.165) 1080 0 R (section*.166) 1081 0 R (section*.167) 1088 0 R (section*.168) 1089 0 R (section*.169) 1102 0 R] /Limits [(section*.164) (section*.169)] >> endobj 3260 0 obj << /Names [(section*.17) 462 0 R (section*.170) 1112 0 R (section*.171) 1113 0 R (section*.172) 1115 0 R (section*.173) 1116 0 R (section*.174) 1117 0 R] /Limits [(section*.17) (section*.174)] >> endobj 3261 0 obj << /Names [(section*.175) 1118 0 R (section*.176) 1152 0 R (section*.177) 1153 0 R (section*.178) 1154 0 R (section*.179) 1155 0 R (section*.18) 463 0 R] /Limits [(section*.175) (section*.18)] >> endobj 3262 0 obj << /Names [(section*.180) 1164 0 R (section*.181) 1165 0 R (section*.182) 1166 0 R (section*.183) 1167 0 R (section*.184) 1175 0 R (section*.185) 1176 0 R] /Limits [(section*.180) (section*.185)] >> endobj 3263 0 obj << /Names [(section*.186) 1177 0 R (section*.187) 1179 0 R (section*.188) 1180 0 R (section*.189) 1181 0 R (section*.19) 465 0 R (section*.190) 1182 0 R] /Limits [(section*.186) (section*.190)] >> endobj 3264 0 obj << /Names [(section*.191) 1183 0 R (section*.192) 1197 0 R (section*.193) 1198 0 R (section*.194) 1199 0 R (section*.195) 1200 0 R (section*.196) 1207 0 R] /Limits [(section*.191) (section*.196)] >> endobj 3265 0 obj << /Names [(section*.197) 1208 0 R (section*.198) 1210 0 R (section*.199) 1211 0 R (section*.2) 278 0 R (section*.20) 466 0 R (section*.200) 1219 0 R] /Limits [(section*.197) (section*.200)] >> endobj 3266 0 obj << /Names [(section*.201) 1220 0 R (section*.202) 1228 0 R (section*.203) 1229 0 R (section*.204) 1230 0 R (section*.205) 1231 0 R (section*.206) 1238 0 R] /Limits [(section*.201) (section*.206)] >> endobj 3267 0 obj << /Names [(section*.207) 1239 0 R (section*.208) 1240 0 R (section*.209) 1241 0 R (section*.21) 481 0 R (section*.210) 1246 0 R (section*.211) 1247 0 R] /Limits [(section*.207) (section*.211)] >> endobj 3268 0 obj << /Names [(section*.212) 1248 0 R (section*.213) 1250 0 R (section*.214) 1258 0 R (section*.215) 1259 0 R (section*.216) 1260 0 R (section*.217) 1261 0 R] /Limits [(section*.212) (section*.217)] >> endobj 3269 0 obj << /Names [(section*.218) 1262 0 R (section*.219) 1263 0 R (section*.22) 482 0 R (section*.220) 1271 0 R (section*.221) 1272 0 R (section*.222) 1273 0 R] /Limits [(section*.218) (section*.222)] >> endobj 3270 0 obj << /Names [(section*.223) 1274 0 R (section*.224) 1275 0 R (section*.225) 1276 0 R (section*.226) 1282 0 R (section*.227) 1283 0 R (section*.228) 1284 0 R] /Limits [(section*.223) (section*.228)] >> endobj 3271 0 obj << /Names [(section*.229) 1288 0 R (section*.23) 483 0 R (section*.230) 1289 0 R (section*.231) 1290 0 R (section*.232) 1297 0 R (section*.233) 1298 0 R] /Limits [(section*.229) (section*.233)] >> endobj 3272 0 obj << /Names [(section*.234) 1299 0 R (section*.235) 1304 0 R (section*.236) 1305 0 R (section*.237) 1306 0 R (section*.238) 1307 0 R (section*.239) 1322 0 R] /Limits [(section*.234) (section*.239)] >> endobj 3273 0 obj << /Names [(section*.24) 486 0 R (section*.240) 1323 0 R (section*.241) 1324 0 R (section*.242) 1325 0 R (section*.243) 1331 0 R (section*.244) 1332 0 R] /Limits [(section*.24) (section*.244)] >> endobj 3274 0 obj << /Names [(section*.245) 1333 0 R (section*.246) 1334 0 R (section*.247) 1355 0 R (section*.248) 1366 0 R (section*.249) 1367 0 R (section*.25) 487 0 R] /Limits [(section*.245) 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1434 0 R (section*.276) 1435 0 R (section*.277) 1436 0 R] /Limits [(section*.272) (section*.277)] >> endobj 3280 0 obj << /Names [(section*.278) 1466 0 R (section*.279) 1467 0 R (section*.28) 500 0 R (section*.280) 1468 0 R (section*.281) 1469 0 R (section*.282) 1470 0 R] /Limits [(section*.278) (section*.282)] >> endobj 3281 0 obj << /Names [(section*.283) 1493 0 R (section*.284) 1494 0 R (section*.285) 1495 0 R (section*.286) 1498 0 R (section*.287) 1499 0 R (section*.288) 1500 0 R] /Limits [(section*.283) (section*.288)] >> endobj 3282 0 obj << /Names [(section*.289) 1501 0 R (section*.29) 501 0 R (section*.290) 1539 0 R (section*.291) 1540 0 R (section*.292) 1541 0 R (section*.293) 1542 0 R] /Limits [(section*.289) (section*.293)] >> endobj 3283 0 obj << /Names [(section*.294) 1543 0 R (section*.295) 1555 0 R (section*.296) 1556 0 R (section*.297) 1569 0 R (section*.298) 1575 0 R (section*.299) 1576 0 R] /Limits [(section*.294) (section*.299)] >> endobj 3284 0 obj << /Names [(section*.3) 405 0 R (section*.30) 502 0 R (section*.300) 1577 0 R (section*.301) 1578 0 R (section*.302) 1579 0 R (section*.303) 1580 0 R] /Limits [(section*.3) (section*.303)] >> endobj 3285 0 obj << /Names [(section*.304) 1587 0 R (section*.305) 1588 0 R (section*.306) 1622 0 R (section*.307) 1623 0 R (section*.308) 1624 0 R (section*.309) 1630 0 R] /Limits [(section*.304) (section*.309)] >> endobj 3286 0 obj << /Names [(section*.31) 504 0 R (section*.310) 1631 0 R (section*.311) 1632 0 R (section*.312) 1638 0 R (section*.313) 1639 0 R (section*.314) 1640 0 R] /Limits [(section*.31) (section*.314)] >> endobj 3287 0 obj << /Names [(section*.315) 1641 0 R (section*.316) 1668 0 R (section*.317) 1669 0 R (section*.318) 1670 0 R (section*.319) 1671 0 R (section*.32) 505 0 R] /Limits [(section*.315) (section*.32)] >> endobj 3288 0 obj << /Names [(section*.320) 1672 0 R (section*.321) 1673 0 R (section*.322) 1686 0 R (section*.323) 1693 0 R (section*.324) 1694 0 R (section*.325) 1695 0 R] /Limits [(section*.320) (section*.325)] >> endobj 3289 0 obj << /Names [(section*.326) 1696 0 R (section*.327) 1697 0 R (section*.328) 1698 0 R (section*.329) 1706 0 R (section*.33) 506 0 R (section*.330) 1707 0 R] /Limits [(section*.326) (section*.330)] >> endobj 3290 0 obj << /Names [(section*.331) 1709 0 R (section*.332) 1710 0 R (section*.333) 1711 0 R (section*.334) 1721 0 R (section*.335) 1722 0 R (section*.336) 1723 0 R] /Limits [(section*.331) (section*.336)] >> endobj 3291 0 obj << /Names [(section*.337) 1729 0 R (section*.338) 1730 0 R (section*.339) 1731 0 R (section*.34) 521 0 R (section*.340) 1744 0 R (section*.341) 1745 0 R] /Limits [(section*.337) (section*.341)] >> endobj 3292 0 obj << /Names [(section*.342) 1746 0 R (section*.343) 1747 0 R (section*.344) 1748 0 R (section*.345) 1761 0 R (section*.346) 1772 0 R (section*.347) 1773 0 R] /Limits [(section*.342) (section*.347)] >> endobj 3293 0 obj << /Names [(section*.348) 1774 0 R (section*.349) 1775 0 R (section*.35) 522 0 R (section*.350) 1795 0 R (section*.351) 1796 0 R (section*.352) 1804 0 R] /Limits [(section*.348) (section*.352)] >> endobj 3294 0 obj << /Names [(section*.353) 1805 0 R (section*.354) 1814 0 R (section*.355) 1815 0 R (section*.356) 1816 0 R (section*.357) 1817 0 R (section*.358) 1818 0 R] /Limits [(section*.353) (section*.358)] >> endobj 3295 0 obj << /Names [(section*.359) 1835 0 R (section*.36) 523 0 R (section*.360) 1836 0 R (section*.361) 1837 0 R (section*.362) 1838 0 R (section*.363) 1839 0 R] /Limits [(section*.359) (section*.363)] >> endobj 3296 0 obj << /Names [(section*.364) 1840 0 R (section*.365) 1841 0 R (section*.366) 1845 0 R (section*.367) 1847 0 R (section*.368) 1848 0 R (section*.369) 1849 0 R] /Limits [(section*.364) (section*.369)] >> endobj 3297 0 obj << /Names [(section*.37) 549 0 R (section*.370) 1857 0 R (section*.371) 1858 0 R (section*.372) 1859 0 R (section*.373) 1860 0 R (section*.374) 1865 0 R] /Limits [(section*.37) (section*.374)] >> endobj 3298 0 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