EnrichedHeatmap

DOI:10.18129/B9.bioc.EnrichedHeatmap

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, seeEnrichedHeatmap.

Making Enriched Heatmaps

Bioconductor version: 3.10

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu

Maintainer: Zuguang Gu

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("EnrichedHeatmap")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("EnrichedHeatmap")

HTML	R Script	1. Make Enriched Heatmaps
HTML	R Script	2. Visualize Categorical Signals
HTML	R Script	3. Compare row ordering methods
HTML	R Script	4. Visualize Comprehensive Associations in Roadmap dataset
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Coverage,GenomeAnnotation,Sequencing,Software,Visualization
Version	1.16.0
In Bioconductor since	BioC 3.2 (R-3.2) (4.5 years)
License	MIT + fileLICENSE
Depends	R (>= 3.1.2), methods, grid,ComplexHeatmap(>= 1.99.0),GenomicRanges
Imports	matrixStats, stats,GetoptLong,Rcpp, utils,locfit,circlize(>= 0.4.5),IRanges
LinkingTo	Rcpp
Suggests	testthat(>= 0.3),knitr,markdown,genefilter,RColorBrewer
SystemRequirements
Enhances
URL	https://github.com/jokergoo/EnrichedHeatmap
Depends On Me
Imports Me	profileplyr
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	EnrichedHeatmap_1.16.0.tar.gz
Windows Binary	EnrichedHeatmap_1.16.0.zip
Mac OS X 10.11 (El Capitan)	EnrichedHeatmap_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EnrichedHeatmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EnrichedHeatmap
Package Short Url	//www.andersvercelli.com/packages/EnrichedHeatmap/
Package Downloads Report	Download Stats