Organism.dplyr

DOI:10.18129/B9.bioc.Organism.dplyr

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, seeOrganism.dplyr.

dplyr-based Access to Bioconductor Annotation Resources

Bioconductor version: 3.10

This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

Author: Martin Morgan [aut, cre], Yubo Cheng [ctb]

Maintainer: Martin Morgan

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Organism.dplyr")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("Organism.dplyr")

HTML	R Script	Organism.dplyr
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation,GenomeAnnotation,Sequencing,Software
Version	1.14.0
In Bioconductor since	BioC 3.5 (R-3.4) (3 years)
License	Artistic-2.0
Depends	R (>= 3.4),dplyr(>= 0.7.0),AnnotationFilter(>= 1.1.3)
Imports	RSQLite,S4Vectors,GenomeInfoDb,IRanges,GenomicRanges,GenomicFeatures,AnnotationDbi, methods, tools, utils,BiocFileCache,DBI,dbplyr
LinkingTo
Suggests	org.Hs.eg.db,TxDb.Hsapiens.UCSC.hg38.knownGene,org.Mm.eg.db,TxDb.Mmusculus.UCSC.mm10.ensGene,testthat,knitr,rmarkdown,BiocStyle,ggplot2
SystemRequirements
Enhances
URL
Depends On Me	annotation
Imports Me	Ularcirc
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	Organism.dplyr_1.14.0.tar.gz
Windows Binary	Organism.dplyr_1.14.0.zip
Mac OS X 10.11 (El Capitan)	Organism.dplyr_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Organism.dplyr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Organism.dplyr
Package Short Url	//www.andersvercelli.com/packages/Organism.dplyr/
Package Downloads Report	Download Stats