sesame

DOI:10.18129/B9.bioc.sesame

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, seesesame.

Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Bioconductor version: 3.10

Tools For analyzing Illumina Infinium DNA methylation arrays.

Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb], Bret Barnes [ctb]

Maintainer: Wanding Zhou

Citation (from within R, entercitation("sesame")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("sesame")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("sesame")

HTML R Script 0. SeSAMe User Guide
HTML R Script 1. Quality Controls
HTML R Script 2. Large Data
HTML R Script 3. Minfi Interaction
PDF Reference Manual
Text NEWS
Text LICENSE

Details

biocViews DNAMethylation,MethylationArray,Preprocessing,QualityControl,Software
Version 1.4.0
In Bioconductor since BioC 3.8 (R-3.5) (1.5 years)
License MIT + fileLICENSE
Depends R (>= 3.6),sesameData, methods
Imports BiocParallel,R6, grDevices, utils,illuminaio,MASS,GenomicRanges,IRanges, grid,preprocessCore, stats,S4Vectors,randomForest,wheatmap,ggplot2, parallel,matrixStats,DNAcopy
LinkingTo
Suggests scales,knitr,rmarkdown,testthat,minfi,SummarizedExperiment,FlowSorted.CordBloodNorway.450k,FlowSorted.Blood.450k,dplyr,tidyr,BiocStyle
SystemRequirements
Enhances
URL https://github.com/zwdzwd/sesame
BugReports https://github.com/zwdzwd/sesame/issues
Depends On Me
Imports Me TCGAbiolinksGUI
Suggests Me sesameData,TCGAbiolinks
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package sesame_1.4.0.tar.gz
Windows Binary sesame_1.4.0.zip
Mac OS X 10.11 (El Capitan) sesame_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sesame
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sesame
Package Short Url //www.andersvercelli.com/packages/sesame/
Package Downloads Report Download Stats

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