sesame

DOI:10.18129/B9.bioc.sesame

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, seesesame.

Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Bioconductor version: 3.10

Tools For analyzing Illumina Infinium DNA methylation arrays.

Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb], Bret Barnes [ctb]

Maintainer: Wanding Zhou

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("sesame")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("sesame")

HTML	R Script	0. SeSAMe User Guide
HTML	R Script	1. Quality Controls
HTML	R Script	2. Large Data
HTML	R Script	3. Minfi Interaction
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DNAMethylation,MethylationArray,Preprocessing,QualityControl,Software
Version	1.4.0
In Bioconductor since	BioC 3.8 (R-3.5) (1.5 years)
License	MIT + fileLICENSE
Depends	R (>= 3.6),sesameData, methods
Imports	BiocParallel,R6, grDevices, utils,illuminaio,MASS,GenomicRanges,IRanges, grid,preprocessCore, stats,S4Vectors,randomForest,wheatmap,ggplot2, parallel,matrixStats,DNAcopy
LinkingTo
Suggests	scales,knitr,rmarkdown,testthat,minfi,SummarizedExperiment,FlowSorted.CordBloodNorway.450k,FlowSorted.Blood.450k,dplyr,tidyr,BiocStyle
SystemRequirements
Enhances
URL	https://github.com/zwdzwd/sesame
BugReports	https://github.com/zwdzwd/sesame/issues
Depends On Me
Imports Me	TCGAbiolinksGUI
Suggests Me	sesameData,TCGAbiolinks
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	sesame_1.4.0.tar.gz
Windows Binary	sesame_1.4.0.zip
Mac OS X 10.11 (El Capitan)	sesame_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sesame
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sesame
Package Short Url	//www.andersvercelli.com/packages/sesame/
Package Downloads Report	Download Stats