| biocViews |
Annotation,GenomeAnnotation,Microarray,Sequencing,Software |
| Version |
1.50.3 |
| In Bioconductor since |
BioC 2.1 (R-2.6) (13 years) |
| License |
Artistic-2.0 |
| Depends |
R (>= 2.7.0), methods, utils, stats4,BiocGenerics(>= 0.29.2),Biobase(>= 1.17.0),IRanges |
| Imports |
DBI,RSQLite,S4Vectors(>= 0.9.25) |
| LinkingTo |
|
| Suggests |
hgu95av2.db,GO.db,org.Sc.sgd.db,org.At.tair.db,KEGG.db,RUnit,TxDb.Hsapiens.UCSC.hg19.knownGene,hom.Hs.inp.db,org.Hs.eg.db,reactome.db,AnnotationForge,graph,EnsDb.Hsapiens.v75,BiocStyle,knitr |
| SystemRequirements |
|
| Enhances |
|
| URL |
|
| Depends On Me |
a4Base,a4Preproc,adme16cod.db,ag.db,agprobe,annotate,AnnotationForge,AnnotationFuncs,anopheles.db0,arabidopsis.db0,ath1121501.db,ath1121501probe,吸引,barley1probe,bovine.db,bovine.db0,bovineprobe,bsubtilisprobe,canine.db,canine.db0,canine2.db,canine2probe,canineprobe,Category,celegans.db,celegansprobe,chicken.db,chicken.db0,chickenprobe,chimera,chimp.db0,ChromHeatMap,citrusprobe,clariomdhumanprobeset.db,clariomdhumantranscriptcluster.db,clariomshumanhttranscriptcluster.db,clariomshumantranscriptcluster.db,clariomsmousehttranscriptcluster.db,clariomsmousetranscriptcluster.db,clariomsrathttranscriptcluster.db,clariomsrattranscriptcluster.db,cottonprobe,customProDB,deco,DEXSeq,DO.db,drosgenome1.db,drosgenome1probe,drosophila2.db,drosophila2probe,ecoli2.db,ecoli2probe,ecoliasv2probe,ecoliK12.db0,ecoliprobe,ecoliSakai.db0,EGSEA,eisa,EpiTxDb,ExpressionView,FEM,fly.db0,GenomicFeatures,GGdata,GGHumanMethCancerPanelv1.db,GO.db,GOFunction,goProfiles,GSReg,Guitar,h10kcod.db,h20kcod.db,hcg110.db,hcg110probe,hgfocus.db,hgfocusprobe,hgu133a.db,hgu133a2.db,hgu133a2probe,hgu133aprobe,hgu133atagprobe,hgu133b.db,hgu133bprobe,hgu133plus2.db,hgu133plus2probe,hgu219.db,hgu219probe,hgu95a.db,hgu95aprobe,hgu95av2.db,hgu95av2probe,hgu95b.db,hgu95bprobe,hgu95c.db,hgu95cprobe,hgu95d.db,hgu95dprobe,hgu95e.db,hgu95eprobe,hguatlas13k.db,hgubeta7.db,hguDKFZ31.db,hgug4100a.db,hgug4101a.db,hgug4110b.db,hgug4111a.db,hgug4112a.db,hgug4845a.db,hguqiagenv3.db,hi16cod.db,hom.At.inp.db,hom.Ce.inp.db,hom.Dm.inp.db,hom.Dr.inp.db,hom.Hs.inp.db,hom.Mm.inp.db,hom.Rn.inp.db,hom.Sc.inp.db,Homo.sapiens,hs25kresogen.db,Hs6UG171.db,HsAgilentDesign026652.db,hta20probeset.db,hta20transcriptcluster.db,hthgu133a.db,hthgu133aprobe,hthgu133b.db,hthgu133bprobe,hthgu133pluspmprobe,htmg430aprobe,htmg430bprobe,htmg430pmprobe,htrat230pmprobe,htratfocusprobe,hu35ksuba.db,hu35ksubaprobe,hu35ksubb.db,hu35ksubbprobe,hu35ksubc.db,hu35ksubcprobe,hu35ksubd.db,hu35ksubdprobe,hu6800.db,hu6800probe,huex10stprobeset.db,huex10sttranscriptcluster.db,HuExExonProbesetLocation,HuExExonProbesetLocationHg18,HuExExonProbesetLocationHg19,hugene10stprobeset.db,hugene10sttranscriptcluster.db,hugene10stv1probe,hugene11stprobeset.db,hugene11sttranscriptcluster.db,hugene20stprobeset.db,hugene20sttranscriptcluster.db,hugene21stprobeset.db,hugene21sttranscriptcluster.db,human.db0,HuO22.db,hwgcod.db,IlluminaHumanMethylation27k.db,IlluminaHumanMethylation450kprobe,illuminaHumanv1.db,illuminaHumanv2.db,illuminaHumanv2BeadID.db,illuminaHumanv3.db,illuminaHumanv4.db,illuminaHumanWGDASLv3.db,illuminaHumanWGDASLv4.db,illuminaMousev1.db,illuminaMousev1p1.db,illuminaMousev2.db,illuminaRatv1.db,indac.db,ipdDb,JazaeriMetaData.db,KEGG.db,LAPOINTE.db,lumiHumanAll.db,lumiHumanIDMapping,lumiMouseAll.db,lumiMouseIDMapping,lumiRatAll.db,lumiRatIDMapping,m10kcod.db,m20kcod.db,maizeprobe,malaria.db0,maPredictDSC,medicagoprobe,MGFM,mgu74a.db,mgu74aprobe,mgu74av2.db,mgu74av2probe,mgu74b.db,mgu74bprobe,mgu74bv2.db,mgu74bv2probe,mgu74c.db,mgu74cprobe,mgu74cv2.db,mgu74cv2probe,mguatlas5k.db,mgug4104a.db,mgug4120a.db,mgug4121a.db,mgug4122a.db,mi16cod.db,mirbase.db,mirna10probe,miRNAtap,MLP,mm24kresogen.db,MmAgilentDesign026655.db,moe430a.db,moe430aprobe,moe430b.db,moe430bprobe,moex10stprobeset.db,moex10sttranscriptcluster.db,MoExExonProbesetLocation,mogene10stprobeset.db,mogene10sttranscriptcluster.db,mogene10stv1probe,mogene11stprobeset.db,mogene11sttranscriptcluster.db,mogene20stprobeset.db,mogene20sttranscriptcluster.db,mogene21stprobeset.db,mogene21sttranscriptcluster.db,mouse.db0,mouse4302.db,mouse4302probe,mouse430a2.db,mouse430a2probe,mpedbarray.db,mta10probeset.db,mta10transcriptcluster.db,mu11ksuba.db,mu11ksubaprobe,mu11ksubb.db,mu11ksubbprobe,Mu15v1.db,mu19ksuba.db,mu19ksubb.db,mu19ksubc.db,Mu22v3.db,Mus.musculus,mwgcod.db,Norway981.db,nugohs1a520180.db,nugohs1a520180probe,nugomm1a520177.db,nugomm1a520177probe,OperonHumanV3.db,org.Ag.eg.db,org.At.tair.db,org.Bt.eg.db,org.Ce.eg.db,org.Cf.eg.db,org.Dm.eg.db,org.Dr.eg.db,org.EcK12.eg.db,org.EcSakai.eg.db,org.Gg.eg.db,org.Hs.eg.db,org.Mm.eg.db,org.Mmu.eg.db,org.Mxanthus.db,org.Pf.plasmo.db,org.Pt.eg.db,org.Rn.eg.db,org.Sc.sgd.db,org.Ss.eg.db,org.Xl.eg.db,OrganismDbi,paeg1aprobe,PANTHER.db,PartheenMetaData.db,pathRender,pedbarrayv10.db,pedbarrayv9.db,PFAM.db,PGSEA,pig.db0,plasmodiumanophelesprobe,POCRCannotation.db,poplarprobe,porcine.db,porcineprobe,primeviewprobe,proBAMr,r10kcod.db,rae230a.db,rae230aprobe,rae230b.db,rae230bprobe,raex10stprobeset.db,raex10sttranscriptcluster.db,RaExExonProbesetLocation,ragene10stprobeset.db,ragene10sttranscriptcluster.db,ragene10stv1probe,ragene11stprobeset.db,ragene11sttranscriptcluster.db,ragene20stprobeset.db,ragene20sttranscriptcluster.db,ragene21stprobeset.db,ragene21sttranscriptcluster.db,rat.db0,rat2302.db,rat2302probe,rattoxfxprobe,Rattus.norvegicus,reactome.db,rgu34a.db,rgu34aprobe,rgu34b.db,rgu34bprobe,rgu34c.db,rgu34cprobe,rguatlas4k.db,rgug4105a.db,rgug4130a.db,rgug4131a.db,rhesus.db0,rhesusprobe,ri16cod.db,riceprobe,RnAgilentDesign028282.db,rnaseqGene,rnu34.db,rnu34probe,Roberts2005Annotation.db,RpsiXML,rta10probeset.db,rta10transcriptcluster.db,rtu34.db,rtu34probe,rwgcod.db,safe,saureusprobe,SemDist,SHDZ.db,soybeanprobe,sugarcaneprobe,targetscan.Hs.eg.db,targetscan.Mm.eg.db,test3probe,tinesath1probe,tomatoprobe,topGO,u133x3p.db,u133x3pprobe,vitisviniferaprobe,wheatprobe,我们rm.db0,xenopus.db0,xenopuslaevisprobe,xlaevis.db,xlaevis2probe,xtropicalisprobe,yeast.db0,yeast2.db,yeast2probe,ygs98.db,ygs98probe,zebrafish.db,zebrafish.db0,zebrafishprobe |
| Imports Me |
adme16cod.db,adSplit,affycoretools,affylmGUI,ag.db,agcdf,AllelicImbalance,annaffy,AnnotationHub,AnnotationHubData,annotatr,anopheles.db0,arabidopsis.db0,artMS,ASpli,ath1121501.db,ath1121501cdf,barley1cdf,beadarray,BiocSet,biomaRt,BioNet,biovizBase,bovine.db,bovine.db0,bovinecdf,bsubtiliscdf,bumphunter,BUSpaRse,CancerMutationAnalysis,canine.db,canine.db0,canine2.db,canine2cdf,caninecdf,CARNIVAL,categoryCompare,ccmap,celegans.db,celeganscdf,cellity,chicken.db,chicken.db0,chickencdf,chimeraviz,chimp.db0,chipenrich,chipenrich.data,ChIPpeakAnno,ChIPseeker,citruscdf,clariomdhumanprobeset.db,clariomdhumantranscriptcluster.db,clariomshumanhttranscriptcluster.db,clariomshumantranscriptcluster.db,clariomsmousehttranscriptcluster.db,clariomsmousetranscriptcluster.db,clariomsrathttranscriptcluster.db,clariomsrattranscriptcluster.db,clusterProfiler,CoCiteStats,compEpiTools,consensusDE,cottoncdf,crisprseekplus,CrispRVariants,crossmeta,csaw,cyp450cdf,DAPAR,debrowser,derfinder,DeSousa2013,DO.db,DominoEffect,DOSE,drosgenome1.db,drosgenome1cdf,drosophila2.db,drosophila2cdf,ecoli2.db,ecoli2cdf,ecoliasv2cdf,ecolicdf,ecoliK12.db0,ecoliSakai.db0,EDASeq,eegc,eisaR,EnrichmentBrowser,enrichplot,ensembldb,erma,esATAC,ExpressionView,FDb.FANTOM4.promoters.hg19,FDb.InfiniumMethylation.hg18,FDb.InfiniumMethylation.hg19,FDb.UCSC.snp135common.hg19,FDb.UCSC.snp137common.hg19,FDb.UCSC.tRNAs,fly.db0,FRASER,GA4GHshiny,gage,GAPGOM,gCMAP,gCMAPWeb,genefilter,geneplotter,GeneTonic,geneXtendeR,GenomicState,GenVisR,GGBase,ggbio,GGHumanMethCancerPanelv1.db,GGtools,GlobalAncova,globaltest,GmicR,GO.db,GOfuncR,GOFunction,GOpro,GOSemSim,goseq,GOSim,goSTAG,GOstats,goTools,gp53cdf,gpart,gQTLstats,graphite,GSEABase,GSEABenchmarkeR,Gviz,gwascat,h10kcod.db,h20kcod.db,hcg110.db,hcg110cdf,hgfocus.db,hgfocuscdf,hgu133a.db,hgu133a2.db,hgu133a2cdf,hgu133acdf,hgu133atagcdf,hgu133b.db,hgu133bcdf,hgu133plus2.db,hgu133plus2cdf,hgu219.db,hgu219cdf,hgu95a.db,hgu95acdf,hgu95av2.db,hgu95av2cdf,hgu95b.db,hgu95bcdf,hgu95c.db,hgu95ccdf,hgu95d.db,hgu95dcdf,hgu95e.db,hgu95ecdf,hguatlas13k.db,hgubeta7.db,hguDKFZ31.db,hgug4100a.db,hgug4101a.db,hgug4110b.db,hgug4111a.db,hgug4112a.db,hgug4845a.db,hguqiagenv3.db,hi16cod.db,hivprtplus2cdf,hom.At.inp.db,hom.Ce.inp.db,hom.Dm.inp.db,hom.Dr.inp.db,hom.Hs.inp.db,hom.Mm.inp.db,hom.Rn.inp.db,hom.Sc.inp.db,Homo.sapiens,hs25kresogen.db,Hs6UG171.db,HsAgilentDesign026652.db,Hspec,hspeccdf,hta20probeset.db,hta20transcriptcluster.db,hthgu133a.db,hthgu133acdf,hthgu133b.db,hthgu133bcdf,hthgu133pluspmcdf,htmg430acdf,htmg430bcdf,htmg430pmcdf,htrat230pmcdf,htratfocuscdf,hu35ksuba.db,hu35ksubacdf,hu35ksubb.db,hu35ksubbcdf,hu35ksubc.db,hu35ksubccdf,hu35ksubd.db,hu35ksubdcdf,hu6800.db,hu6800cdf,hu6800subacdf,hu6800subbcdf,hu6800subccdf,hu6800subdcdf,huex10stprobeset.db,huex10sttranscriptcluster.db,hugene10stprobeset.db,hugene10sttranscriptcluster.db,hugene10stv1cdf,hugene11stprobeset.db,hugene11sttranscriptcluster.db,hugene20stprobeset.db,hugene20sttranscriptcluster.db,hugene21stprobeset.db,hugene21sttranscriptcluster.db,human.db0,HuO22.db,hwgcod.db,ideal,IlluminaHumanMethylation27k.db,illuminaHumanv1.db,illuminaHumanv2.db,illuminaHumanv2BeadID.db,illuminaHumanv3.db,illuminaHumanv4.db,illuminaHumanWGDASLv3.db,illuminaHumanWGDASLv4.db,illuminaMousev1.db,illuminaMousev1p1.db,illuminaMousev2.db,illuminaRatv1.db,IMAS,indac.db,InPAS,interactiveDisplay,isomiRs,IVAS,JazaeriMetaData.db,karyoploteR,KEGG.db,KEGGlincs,keggorthology,KEGGprofile,LAPOINTE.db,LRBaseDbi,lumi,lumiHumanAll.db,lumiHumanIDMapping,lumiMouseAll.db,lumiMouseIDMapping,lumiRatAll.db,lumiRatIDMapping,m10kcod.db,m20kcod.db,maizecdf,malaria.db0,mAPKL,MCbiclust,mdgsa,medicagocdf,MeSHDbi,meshes,MetaboSignal,methyAnalysis,methylGSA,methylumi,mgu74a.db,mgu74acdf,mgu74av2.db,mgu74av2cdf,mgu74b.db,mgu74bcdf,mgu74bv2.db,mgu74bv2cdf,mgu74c.db,mgu74ccdf,mgu74cv2.db,mgu74cv2cdf,mguatlas5k.db,mgug4104a.db,mgug4120a.db,mgug4121a.db,mgug4122a.db,mi16cod.db,MIGSA,MineICA,MiRaGE,mirbase.db,miRBaseVersions.db,mirIntegrator,mirna102xgaincdf,mirna10cdf,mirna20cdf,miRNAmeConverter,miRNAtap.db,missMethyl,mm24kresogen.db,MmAgilentDesign026655.db,moe430a.db,moe430acdf,moe430b.db,moe430bcdf,moex10stprobeset.db,moex10sttranscriptcluster.db,mogene10stprobeset.db,mogene10sttranscriptcluster.db,mogene10stv1cdf,mogene11stprobeset.db,mogene11sttranscriptcluster.db,mogene20stprobeset.db,mogene20sttranscriptcluster.db,mogene21stprobeset.db,mogene21sttranscriptcluster.db,mouse.db0,mouse4302.db,mouse4302cdf,mouse430a2.db,mouse430a2cdf,mpedbarray.db,mta10probeset.db,mta10transcriptcluster.db,mu11ksuba.db,mu11ksubacdf,mu11ksubb.db,mu11ksubbcdf,Mu15v1.db,mu19ksuba.db,mu19ksubacdf,mu19ksubb.db,mu19ksubbcdf,mu19ksubc.db,mu19ksubccdf,Mu22v3.db,mu6500subacdf,mu6500subbcdf,mu6500subccdf,mu6500subdcdf,multiMiR,Mus.musculus,mwgcod.db,NanoStringQCPro,nanotatoR,NoRCE,Norway981.db,nugohs1a520180.db,nugohs1a520180cdf,nugomm1a520177.db,nugomm1a520177cdf,Onassis,ontoProc,OperonHumanV3.db,ORFik,org.Ag.eg.db,org.At.tair.db,org.Bt.eg.db,org.Ce.eg.db,org.Cf.eg.db,org.Dm.eg.db,org.Dr.eg.db,org.EcK12.eg.db,org.EcSakai.eg.db,org.Gg.eg.db,org.Hs.eg.db,org.Mm.eg.db,org.Mmu.eg.db,org.Pf.plasmo.db,org.Pt.eg.db,org.Rn.eg.db,org.Sc.sgd.db,org.Ss.eg.db,org.Xl.eg.db,Organism.dplyr,PADOG,paeg1acdf,PartheenMetaData.db,pathview,PathwaySplice,pcaExplorer,pcaGoPromoter,PCpheno,pedbarrayv10.db,pedbarrayv9.db,PFAM.db,PGA,phantasus,phenoTest,pig.db0,plasmodiumanophelescdf,POCRCannotation.db,PolyPhen.Hsapiens.dbSNP131,poplarcdf,porcine.db,porcinecdf,ppiData,primeviewcdf,psichomics,pwOmics,qpgraph,QuasR,r10kcod.db,rae230a.db,rae230acdf,rae230b.db,rae230bcdf,raex10stprobeset.db,raex10sttranscriptcluster.db,ragene10stprobeset.db,ragene10sttranscriptcluster.db,ragene10stv1cdf,ragene11stprobeset.db,ragene11sttranscriptcluster.db,ragene20stprobeset.db,ragene20sttranscriptcluster.db,ragene21stprobeset.db,ragene21sttranscriptcluster.db,rat.db0,rat2302.db,rat2302cdf,rattoxfxcdf,Rattus.norvegicus,rCGH,reactome.db,ReactomePA,REDseq,regutools,ReportingTools,restfulSE,rgsepd,rgu34a.db,rgu34acdf,rgu34b.db,rgu34bcdf,rgu34c.db,rgu34ccdf,rguatlas4k.db,rgug4105a.db,rgug4130a.db,rgug4131a.db,rhesus.db0,rhesuscdf,ri16cod.db,ribosomeProfilingQC,ricecdf,RmiR.Hs.miRNA,RmiR.hsa,RNAAgeCalc,RnAgilentDesign028282.db,rnu34.db,rnu34cdf,Roberts2005Annotation.db,rrvgo,rta10probeset.db,rta10transcriptcluster.db,rTRM,rtu34.db,rtu34cdf,rwgcod.db,saureuscdf,SBGNview,ScISI,scPipe,scruff,scTensor,SGSeq,SHDZ.db,SIFT.Hsapiens.dbSNP132,SIFT.Hsapiens.dbSNP137,signatureSearch,singleCellTK,SLGI,SMITE,soybeancdf,SpidermiR,StarBioTrek,SubCellBarCode,sugarcanecdf,targetscan.Hs.eg.db,targetscan.Mm.eg.db,TCGAutils,tenXplore,test1cdf,test2cdf,test3cdf,tigre,tomatocdf,trackViewer,trena,TxDb.Athaliana.BioMart.plantsmart22,TxDb.Athaliana.BioMart.plantsmart25,TxDb.Athaliana.BioMart.plantsmart28,TxDb.Btaurus.UCSC.bosTau8.refGene,TxDb.Btaurus.UCSC.bosTau9.refGene,TxDb.Celegans.UCSC.ce11.ensGene,TxDb.Celegans.UCSC.ce11.refGene,TxDb.Celegans.UCSC.ce6.ensGene,TxDb.Cfamiliaris.UCSC.canFam3.refGene,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Dmelanogaster.UCSC.dm6.ensGene,TxDb.Drerio.UCSC.danRer10.refGene,TxDb.Drerio.UCSC.danRer11.refGene,TxDb.Ggallus.UCSC.galGal4.refGene,TxDb.Ggallus.UCSC.galGal5.refGene,TxDb.Ggallus.UCSC.galGal6.refGene,TxDb.Hsapiens.BioMart.igis,TxDb.Hsapiens.UCSC.hg18.knownGene,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Mmulatta.UCSC.rheMac10.refGene,TxDb.Mmulatta.UCSC.rheMac3.refGene,TxDb.Mmulatta.UCSC.rheMac8.refGene,TxDb.Mmusculus.UCSC.mm10.ensGene,TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Mmusculus.UCSC.mm9.knownGene,TxDb.Ptroglodytes.UCSC.panTro4.refGene,TxDb.Ptroglodytes.UCSC.panTro5.refGene,TxDb.Ptroglodytes.UCSC.panTro6.refGene,TxDb.Rnorvegicus.BioMart.igis,TxDb.Rnorvegicus.UCSC.rn4.ensGene,TxDb.Rnorvegicus.UCSC.rn5.refGene,TxDb.Rnorvegicus.UCSC.rn6.refGene,TxDb.Scerevisiae.UCSC.sacCer2.sgdGene,TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,TxDb.Sscrofa.UCSC.susScr11.refGene,TxDb.Sscrofa.UCSC.susScr3.refGene,tximeta,u133aaofav2cdf,u133x3p.db,u133x3pcdf,Ularcirc,UniProt.ws,VariantAnnotation,VariantFiltering,ViSEAGO,vitisviniferacdf,wheatcdf,我们rm.db0,xenopus.db0,xenopuslaeviscdf,xlaevis.db,xlaevis2cdf,xtropicaliscdf,ye6100subacdf,ye6100subbcdf,ye6100subccdf,ye6100subdcdf,yeast.db0,yeast2.db,yeast2cdf,ygs98.db,ygs98cdf,zebrafish.db,zebrafish.db0,zebrafishcdf |
| Suggests Me |
APAlyzer,BiocCaseStudies,BiocGenerics,BiocOncoTK,BloodCancerMultiOmics2017,CellTrails,cicero,cola,curatedAdipoChIP,DEGreport,edgeR,esetVis,FELLA,FGNet,fgsea,GA4GHclient,gCrisprTools,geecc,GeneAnswers,GeneRegionScan,GenomicRanges,iSEEu,limma,miRLAB,MmPalateMiRNA,oligo,OUTRIDER,piano,Pigengene,pRoloc,qcmetrics,R3CPET,recount,RforProteomics,RGalaxy,scRNAseq,sigPathway,SingleR,SummarizedExperiment,TFutils,tidybulk,topconfects,weitrix,wiggleplotr |
| Links To Me |
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| Build Report |
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