CancerInSilico

DOI:10.18129/B9.bioc.CancerInSilico

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, seeCancerInSilico.

An R interface for computational modeling of tumor progression

Bioconductor version: 3.11

The CancerInSilico package provides an R interface for running mathematical models of tumor progresson and generating gene expression data from the results. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.

Author: Thomas D. Sherman, Raymond Cheng, Elana J. Fertig

Maintainer: Thomas D. Sherman , Elana J. Fertig

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("CancerInSilico")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("CancerInSilico")

HTML	R Script	The CancerInSilico Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics,CellBiology,GeneExpression,ImmunoOncology,MathematicalBiology,RNASeq,SingleCell,Software,SystemsBiology
Version	2.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (4 years)
License	GPL-2
Depends	R (>= 3.4),Rcpp
Imports	methods, utils, graphics, stats
LinkingTo	Rcpp,BH
Suggests	testthat,knitr,rmarkdown,BiocStyle,Rtsne,viridis,rgl,gplots
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	CancerInSilico_2.8.0.tar.gz
Windows Binary	CancerInSilico_2.8.0.zip(32- & 64-bit)
macOS 10.13 (High Sierra)	CancerInSilico_2.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CancerInSilico
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CancerInSilico
Package Short Url	//www.andersvercelli.com/packages/CancerInSilico/
Package Downloads Report	Download Stats