GenomeInfoDb

DOI:10.18129 / B9.bioc.GenomeInfoDb

此包适用于Bioconductor的3.11版本;有关稳定的最新发布版本,请参见GenomeInfoDb

用于操作染色体名称的实用程序,包括修改它们以遵循特定的命名风格

Bioconductor版本:3.11

包含定义并允许在不同染色体序列命名约定(例如,“chr1”与“1”)之间进行转换的数据和函数,包括一个试图按自然顺序而不是字典顺序排列序列名称的函数。

作者:索纳利·阿罗拉,马丁·摩根,马克·卡尔森,H. Pagès

维护者:Bioconductor包维护者< Bioconductor .org>的维护者

引用(从R中,输入引用(“GenomeInfoDb”)):

安装

要安装此包,启动R(版本“4.0”)并输入:

如果(!install.packages("BiocManager") BiocManager::install("GenomeInfoDb")

对于较老版本的R,请参考相应的Bioconductor释放

文档

要查看系统中安装的此包版本的文档,请从R开始并输入:

browseVignettes(“GenomeInfoDb”)

PDF R脚本 GenomeInfoDb: GenomeInfoDb简介
PDF R脚本 将你的生物体提交到GenomeInfoDb
PDF 参考手册
文本 新闻
视频 YouTube

细节

biocViews 注释DataRepresentation遗传学GenomeAnnotation软件
版本 1.24.2
Bioconductor自 BioC 2.14 (R-3.1)(6.5年)
许可证 艺术- 2.0
取决于 R(>= 3.1),方法,BiocGenerics(> = 0.13.8),S4Vectors(> = 0.25.12),IRanges(> = 2.13.12)
进口 统计数据、stats4跑龙套,RCurlGenomeInfoDbData
链接
建议 GenomicRangesRsamtoolsGenomicAlignmentsGenomicFeaturesTxDb.Dmelanogaster.UCSC.dm3.ensGeneBSgenomeBSgenome.Scerevisiae.UCSC.sacCer2BSgenome.Celegans.UCSC.ce2BSgenome.Hsapiens.NCBI.GRCh38RUnitBiocStyleknitr
SystemRequirements
增强了
URL
取决于我 BRGenomicsBSgenomebumphunterChIPComp食典委CSAReQTLGenomicAlignmentsGenomicFeaturesGenomicRangesGenomicTuplesgmapRgroHMMHelloRangesIdeoVizmethyAnalysisMTseekerRsamtools范围SNPlocs.Hsapiens.dbSNP141.GRCh38SNPlocs.Hsapiens.dbSNP142.GRCh37VariantAnnotationXtraSNPlocs.Hsapiens.dbSNP141.GRCh38
进口我 AllelicImbalance高山amplicanAneuFinderAnnotationHubDataannotatrASpediaFIATACseqQCBaalChIP舞会礼服BasicSTARRseqbiovizBasebiscuiteerBiSeqbnbc分歧点breakpointRBSgenomebsseqBUSpaRseCAGEfightR篮球选手卡斯珀cBioPortalDataCexoRchimeravizChIPanalyserchipenrichchipenrich.dataChIPexoQualChIPpeakAnnoChIPseekerchromstaRchromVARCINdexcircRNAprofilercleanUpdTSeqcn.mopscnCNVfilteRCNVPanelizerCNVRangercompEpiToolsconsensusSeekeRconumeeCopyNumberPlots文案CrispRVariantscsawcustomProDBDAMEfinderdecompTumor2Sig位深蓝derfinderderfinderPlotDEScan2DEWSeqdiffHicdiffloopDMRcateDMRScandmrseqDominoEffecteasyRNASeq埃尔默ENCODExplorerenrichTFensembldbensemblVEPepigenomixEpiTxDbepivizrepivizrDataepivizrStandaloneermaesATACEventPointerexomeCopyexomePeak2fitCons.UCSC.hg19弗雷泽FunChIPfuntooNormGA4GHclientGA4GHshinygcapcgenbankrgeneAttributionGenoGAMgenomationgenomeIntervalsGenomicFilesGenomicInteractionsGenomicOZoneGenomicScoresGenomicStategenosetgenotypeevalGenVisRggbioGGtoolsgmoviz哥特gQTLstatsgrasp2dbGreyListChIPGUIDEseqGvizgwascath5vc的热图HiCBricksHiTCHTSeqGenieidr2dimaInPAS检查InteractionSetIsoformSwitchAnalyzeRivakaryoploteRldblockMACPETMADSEQMafDb.1Kgenomes.phase1.GRCh38MafDb.1Kgenomes.phase1.hs37d5MafDb.1Kgenomes.phase3.GRCh38MafDb.1Kgenomes.phase3.hs37d5MafDb.ExAC.r1.0.GRCh38MafDb.ExAC.r1.0.hs37d5MafDb.ExAC.r1.0.nonTCGA.GRCh38MafDb.ExAC.r1.0.nonTCGA.hs37d5MafDb.gnomAD.r2.1.GRCh38MafDb.gnomAD.r2.1.hs37d5MafDb.gnomAD.r3.0.GRCh38MafDb.gnomADex.r2.1.GRCh38MafDb.gnomADex.r2.1.hs37d5MafDb.TOPMed.freeze5.hg19MafDb.TOPMed.freeze5.hg38MafH5.gnomAD.r3.0.GRCh38微波激射器metagenemetagene2metaseqR2metavizrMethCPmethimputemethInheritSimmethylKitmethylPipemethylSigmethylumimethyvimminfiMinimumDistanceMMAPPR2马赛克motifbreakRmotifmatchrmsgbsRMTseekerDatamultiHiCcompareMutationalPatternsmyvariantNADfinderNarrowPeaksnetDxnormr诊断OMICsPCAORFikOrganism.dplyrpanelcn.mopsphastCons100way.UCSC.hg19phastCons100way.UCSC.hg38phastCons7way.UCSC.hg38πpipeFrameplyrangespodkat婴儿车prebsprofileplyrProteomicsAnnotationHubDataPureCNqpgraphqseaQuasRR3CPETr3CseqRaggedExperimentRareVariantVisRariantRcade美国广播公司rCGH重新计票地区regionReportREMPRepitoolsRiboProfilingriboSeqRribosomeProfilingQCRJMCMCNucleosomesRNAmodR咆哮RTCGAToolboxrtracklayerscmeth颈背segmentSeqSeqArrayseqCATseqplotsseqsetvissevenCSGSeqShortRead签名者SigsPackSNPhoodSNPlocs.Hsapiens.dbSNP141.GRCh38SNPlocs.Hsapiens.dbSNP142.GRCh37SNPlocs.Hsapiens.dbSNP144.GRCh37SNPlocs.Hsapiens.dbSNP144.GRCh38SNPlocs.Hsapiens.dbSNP149.GRCh38SNPlocs.Hsapiens.dbSNP150.GRCh38SNPlocs.Hsapiens.dbSNP151.GRCh38soGGiSomaticSignaturesSparseSignaturesSplicingGraphs分裂srnadiff斯坦strandCheckRSummarizedExperimentTAPseqTarSeqQCTCGAutilsTCGAWorkflowTFBSToolsTitanCNA三硝基甲苯trackViewertranscriptRtRNAscanImportTSRchitectTVTBtximetaTxRegInfraUlarcircVanillaICEVariantFilteringVariantToolsvaspwiggleplotrXtraSNPlocs.Hsapiens.dbSNP141.GRCh38XtraSNPlocs.Hsapiens.dbSNP144.GRCh37XtraSNPlocs.Hsapiens.dbSNP144.GRCh38YAPSAyriMulti
建议我 AnnotationForgeAnnotationHubBiocOncoTKchromswitchExperimentHubDatagQTLBasemethrixparglmsQDNAseq收回StructuralVariantAnnotationTFutils
我的链接
构建报告

包档案

遵循2021年欧洲杯比分预测 在R会话中使用这个包的说明。

源包 GenomeInfoDb_1.24.2.tar.gz
Windows二进制 GenomeInfoDb_1.24.2.zip
macOS 10.13 (High Sierra) GenomeInfoDb_1.24.2.tgz
源库 git克隆https://git.bioconductor.org/packages/GenomeInfoDb
源存储库(开发人员访问) git克隆git@git.bioconductor.org:包/ GenomeInfoDb
包短Url //www.andersvercelli.com/packages/GenomeInfoDb/
包下载报告 下载数据

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