林玛

doi:10.18129/b9.bioc.limma

此软件包适用于3.11版的生物导体;对于稳定的最新版本,请参阅林玛

微阵列数据的线性模型

生物导体版本:3.11

数据分析,线性模型和微阵列数据的差异表达。

作者:Gordon Smyth [Cre,Aut],Yifang Hu [CTB],Matthew Ritchie [CTB],Jeremy Silver [CTB],James Wettenhall [CTB],Davis McCarthy [CTB],Di Wu [CTB],Wei Shi [CTB [CTB]],Belinda Phipson [CTB],Aaron Lun [CTB],Natalie Thorne [CTB],Alicia Oshlack [CTB],Carolyn de Graaf [CTB],Yunshun Chen [CTB],Mette Langaas [CTB],Egil Ferkil Ferkingst [CTB],Marcus Davy [CTB],Francois Pepin [CTB],Dongseok Choi [CTB]

维护者:gordon smyth

引用(从r内,输入引用(“ Limma”)):

安装

要安装此软件包,请启动R(版本“ 4.0”)并输入:

if(!sireseenamespace(“ biocmanager”,悄悄= true))install.packages(“ biocmanager”)biocmanager :: install(“ limma”)

对于R的较旧版本,请参考适当的生物导体释放

文档

要查看系统中安装此软件包的版本的文档,请启动R并输入:

Browsevignettes(“ Limma”)

PDF Limma一页简介
PDF usersuide.pdf
PDF 参考手册
文本 消息

细节

生物浏览 替代方案,,,,批处理效应,,,,贝叶斯,,,,生物医学信息学,,,,细胞生物学,,,,化学信息学,,,,聚类,,,,DataImport,,,,差异性,,,,差速器,,,,表观遗传学,,,,exonarray,,,,功能基因组学,,,,基因表达,,,,基因烯,,,,遗传学,,,,免疫学,,,,代谢组学,,,,MicroRNAARRAY,,,,微阵列,,,,多重组合,,,,正常化,,,,Onechannel,,,,预处理,,,,专有Platratforms,,,,蛋白质组学,,,,QualityControl,,,,rnaseq,,,,回归,,,,测序,,,,软件,,,,系统生物学,,,,时间科,,,,转录,,,,转录组学,,,,两通道,,,,Mrnamicroarray
版本 3.44.3
在生物导体中 Bioc 1.6(R-2.1)或更早(> 15.5岁)
执照 GPL(> = 2)
要看 R(> = 3.6.0)
进口 grdevices,图形,统计,utils,方法
链接
建议 副词,,,,AnnotationDbi,,,,偏见,,,,生物酶,,,,椭圆,,,,go.db,,,,GPLOTS,,,,Illuminaio,,,,Locfit,,,,大量的,,,,org.hs.eg.db,花键,Statmod(> = 1.2.2),VSN
系统要求
增强
URL http://bioinf.wehi.edu.au/limma
取决于我 A4base,,,,AffyExpress,,,,agimicrorna,,,,比尔塔,,,,blma,,,,卡利布,,,,CCL4,,,,CGHMCR,,,,嵌合体脑,,,,克利普达,,,,codelink,,,,兑换,,,,Cormotif,,,,装饰,,,,DEQMS,,,,drugvsdisease,,,,EDGER,,,,EGSEA123,,,,eximir,,,,表达,,,,女性,,,,Fletcher2013a,,,,GCMAP,,,,Genefu,,,,HD2013SGI,,,,htqpcr,,,,同工型间分析仪,,,,Maendtoend,,,,迈格巴克,,,,mapredictdsc,,,,Marray,,,,元基因组,,,,metaseqr,,,,metaseqr2,,,,甲基化arrayAnalysy,,,,mmpalatemirna,,,,mpra,,,,qpcrnorm,,,,Qusage,,,,RBM,,,,ReactomeGsa.Data,,,,林戈,,,,RNASEQ123,,,,rnbeads,,,,rnits,,,,碎片,,,,srgnet,,,,吐司,,,,翻译,,,,涡轮瘤,,,,方差分区,,,,西瓜
进口我 absseq,,,,Affycoretools,,,,affylmgui,,,,amaretto,,,,阿纳米尔,,,,动物库,,,,anota2seq,,,,ArrayExpress,,,,阵列,,,,ArrayQualityMetrics,,,,Arraytools,,,,Artms,,,,Aspediafi,,,,atacseqqc,,,,吸引,,,,awfisher,,,,舞会礼服,,,,batchqc,,,,Beadarray,,,,Beadarrayusecases,,,,Biotmle,,,,BSSEQ,,,,气泡,,,,Bumphunter,,,,卡利布,,,,取消分析,,,,cancersubtypes,,,,卡斯珀,,,,冠军,,,,芯片,,,,Chippeakanno,,,,簇发酵,,,,cnvranger,,,,coexnet,,,,组合,,,,compcoder,,,,承认,,,,共识,,,,共识,,,,countclust,,,,crlmm,,,,Crossicc,,,,杂交,,,,CSAW,,,,CTRAP,,,,ctsge,,,,damefinder,,,,达米尔塞克,,,,达帕尔,,,,碎片器,,,,dep,,,,derfinderplot,,,,Desubs,,,,差异,,,,diffcyt,,,,Diffhic,,,,diffloop,,,,清楚的,,,,dmelsgi,,,,dmrcate,,,,Doscheda,,,,Drimseq,,,,EBSEA,,,,EEGC,,,,埃加德,,,,Egsea,,,,艾萨尔,,,,富集兄弟,,,,Erccdashboard,,,,EventPointer,,,,探索酶,,,,ExploreModelMatrix,,,,表达式正式工作流,,,,Flowbin,,,,flowspy,,,,gcrisprtools,,,,gdcrnatools,,,,geneselectmmd,,,,地球,,,,GGBASE,,,,Gosummaries,,,,gqtlstats,,,,Guideseq,,,,Hipathia,,,,htqpcr,,,,冰茶,,,,Icheck,,,,Ichip,,,,icobra,,,,理想的,,,,inpas,,,,Isomirs,,,,Knowseq,,,,利马瓜,,,,linnorm,,,,lipidr,,,,lmdme,,,,lvsmirna,,,,MAPKL,,,,MBQN,,,,MCSEA,,,,一顿饭,,,,甲基库,,,,甲基粘合,,,,methyvim,,,,Migsa,,,,Minfi,,,,Mirlab,,,,甲基小姐,,,,mlseq,,,,mmpalatemirna,,,,单片,,,,MOONLIGHTR,,,,MSSTATS,,,,MSSTATSTMT,,,,多胎,,,,马斯喀特,,,,NADFINDER,,,,NEM,,,,nethet,,,,无索引,,,,普通剂,,,,OGSA,,,,奥林,,,,Omicrexposom,,,,oppti,,,,Oveseg,,,,PAA,,,,padog,,,,Pathostat,,,,PCAEXPLORER,,,,佩卡,,,,pepstat,,,,phantasus,,,,,,,,聚酯纤维,,,,Projectr,,,,psichomics,,,,pwrewas,,,,QPLEXANALYZER,,,,QSEA,,,,RCGH,,,,recountworkflow,,,,regsplice,,,,报告工具,,,,林戈,,,,rnainteract,,,,rnaither,,,,罗斯,,,,rtcgatoolbox,,,,RTN,,,,rtopper,,,,ScClassify,,,,烤饼,,,,斯克兰,,,,Sepira,,,,seqsetvis,,,,西加尔,,,,signaturesearchdata,,,,simbindprofiles,,,,Singlecellsignalr,,,,Singlecelltk,,,,Snapcgh,,,,SSPA,,,,stategra,,,,SVA,,,,SVAPLSSEQ,,,,Systempiper,,,,时间科,,,,次级表演,,,,topaseq,,,,TPP,,,,TPP2D,,,,转录图,,,,TVTB,,,,Tweedeseq,,,,VSN,,,,Weitrix,,,,扳手,,,,山药,,,,
建议我 Abarray,,,,adacgh2,,,,数组,,,,Beadarraysnp,,,,生物室,,,,生物探测,,,,生物群,,,,Bionet,,,,BloodCancermultiomics2017,,,,CageWorkFlow,,,,类别,,,,类别Compare,,,,Celaref,,,,蜂窝架,,,,细胞混蛋,,,,分类,,,,CMA,,,,齿轮,,,,Cydar,,,,dearseq,,,,DegReport,,,,德芬德,,,,DESCAN2,,,,染料,,,,轻松报告,,,,弯头,,,,fgsea,,,,氟化物学,,,,量规,,,,geuvadistranscriptexpr,,,,glimma,,,,GSRI,,,,GSVA,,,,哈曼,,,,热倍,,,,isobar,,,,春日,,,,莱斯,,,,Lionessr,,,,Lumi,,,,哺乳动物,,,,桅杆,,,,MDGSA,,,,甲基菌,,,,MLP,,,,NPGSEA,,,,奥利戈,,,,OPPAR,,,,PGSEA,,,,钢琴,,,,plw,,,,preda,,,,Proda,,,,彪马,,,,兰特罗,,,,rcade,,,,RibosomeProfilingQC,,,,rtopper,,,,rtracklayer,,,,评分,,,,七十年代,,,,Simplesinglecell,,,,斯塔格,,,,subseq,,,,总结,,,,tcgabiolinks,,,,tidybulk,,,,TopConfects,,,,tximeta,,,,tximport,,,,Viseago,,,,ZFPKM
链接到我
构建报告

包装档案

跟随2021年欧洲杯比分预测 在R会话中使用此软件包的说明。

源包 limma_3.44.3.tar.gz
Windows二进制 limma_3.44.3.3.zip(32-和64位)
MacOS 10.13(高山脉) limma_3.44.3.tgz
源存储库 git克隆https://git.bioconductor.org/packages/limma
源存储库(开发人员访问) git clone git@git.bioconductor.org:包装/limma
包装短URL //www.andersvercelli.com/packages/limma/
软件包下载报告 下载统计

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