pcot2

DOI:10.18129/B9.bioc.pcot2

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, seepcot2.

Principal Coordinates and Hotelling's T-Square method

Bioconductor version: 3.11

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author: Sarah Song, Mik Black

Maintainer: Sarah Song

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("pcot2")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("pcot2")

PDF	R Script	PCOT2 Vignette
PDF		Reference Manual

Details

biocViews	DifferentialExpression,GeneExpression,KEGG,Microarray,Network,Software
Version	1.56.0
In Bioconductor since	BioC 1.9 (R-2.4) (14 years)
License	GPL (>= 2)
Depends	R (>= 2.0.0), grDevices,Biobase,amap
Imports
LinkingTo
Suggests	multtest,hu6800.db,KEGG.db,mvtnorm
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	pcot2_1.56.0.tar.gz
Windows Binary	pcot2_1.56.0.zip
macOS 10.13 (High Sierra)	pcot2_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pcot2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pcot2
Package Short Url	//www.andersvercelli.com/packages/pcot2/
Package Downloads Report	Download Stats