siggenes

DOI:10.18129/B9.bioc.siggenes

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, seesiggenes.

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Bioconductor version: 3.11

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("siggenes")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("siggenes")

HTML		identify.sam.html
HTML		plot.ebam.html
HTML		plot.finda0.html
HTML		plot.sam.html
HTML		print.ebam.html
HTML		print.finda0.html
HTML		print.sam.html
PDF	R Script	siggenes Manual
PDF		siggenesRnews.pdf
HTML		summary.ebam.html
HTML		summary.sam.html
PDF		Reference Manual

Details

biocViews	DifferentialExpression,ExonArray,GeneExpression,Microarray,MultipleComparison,SNP,Software
Version	1.62.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 15.5 years)
License	LGPL (>= 2)
Depends	Biobase,multtest, splines, methods
Imports	stats4, grDevices, graphics, stats,scrime(>= 1.2.5)
LinkingTo
Suggests	affy,annotate,genefilter,KernSmooth
SystemRequirements
Enhances
URL
Depends On Me	KCsmart
Imports Me	coexnet,DAPAR,DeSousa2013,minfi,trio,XDE
Suggests Me	GCSscore,logicFS
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	siggenes_1.62.0.tar.gz
Windows Binary	siggenes_1.62.0.zip
macOS 10.13 (High Sierra)	siggenes_1.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/siggenes
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/siggenes
Package Short Url	//www.andersvercelli.com/packages/siggenes/
Package Downloads Report	Download Stats