HCAData

DOI:10.18129/B9.bioc.HCAData

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, seeHCAData.

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Bioconductor version: 3.11

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

Author: Federico Marini [aut, cre]

Maintainer: Federico Marini

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("HCAData")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("HCAData")

HTML	R Script	Accessing the Human Cell Atlas datasets
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData,ExperimentHub,ExpressionData,RNASeqData,SingleCellData
Version	1.4.0
License	MIT + fileLICENSE
Depends	R (>= 3.6),SingleCellExperiment
Imports	ExperimentHub,AnnotationHub,HDF5Array, utils
LinkingTo
Suggests	knitr,rmarkdown,BiocStyle,scran(>= 1.11.4),BiocSingular,scater,Rtsne,igraph,iSEE,testthat
SystemRequirements
Enhances
URL	https://github.com/federicomarini/HCAData
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	HCAData_1.4.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/HCAData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HCAData
Package Short Url	//www.andersvercelli.com/packages/HCAData/
Package Downloads Report	Download Stats