VariantAnnotation
DOI:
10.18129 / B9.bioc.VariantAnnotation
此包适用于Bioconductor 3.12版本;有关稳定的最新发布版本,请参见VariantAnnotation.
遗传变异的注释
Bioconductor版本:3.12
注释变体,计算氨基酸编码变化,预测编码结果。
作者:Bioconductor Package Maintainer [aut, cre], Valerie Oberchain [aut], Martin Morgan [aut], Michael Lawrence [aut], Stephanie Gogarten [ctb]
维护者:Bioconductor Package维护者< Maintainer at Bioconductor .org>
引文(从R内,输入引用(“VariantAnnotation”)
):
安装
要安装此包,请启动R(版本“4.0”)并输入:
如果(!requireNamespace("BiocManager", quiet = TRUE)) install.packages("BiocManager") BiocManager::install("VariantAnnotation")
对于R的旧版本,请参考相应的Bioconductor释放.
文档
要查看系统中安装的此包版本的文档,请启动R并输入:
browseVignettes(“VariantAnnotation”)
细节
biocViews |
注释,DataImport,遗传学,单核苷酸多态性,测序,软件,VariantAnnotation |
版本 |
1.36.0 |
在Bioconductor |
BioC 2.9 (R-2.14)(9.5年) |
许可证 |
艺术- 2.0 |
取决于 |
R(>= 2.8.0),方法,BiocGenerics(> = 0.15.3),MatrixGenerics,GenomeInfoDb(> = 1.15.2),GenomicRanges(> = 1.41.5),SummarizedExperiment(> = 1.19.5),Rsamtools(> = 1.99.0) |
进口 |
跑龙套,DBI,zlibbioc,Biobase,S4Vectors(> = 0.27.12),IRanges(> = 2.23.9),XVector(> = 0.29.2),Biostrings(> = 2.57.2),AnnotationDbi(> = 1.27.9),rtracklayer(> = 1.39.7),BSgenome(> = 1.47.3),GenomicFeatures(> = 1.31.3) |
链接 |
S4Vectors,IRanges,XVector,Biostrings,Rhtslib |
建议 |
RUnit,AnnotationHub,BSgenome.Hsapiens.UCSC.hg19,TxDb.Hsapiens.UCSC.hg19.knownGene,SNPlocs.Hsapiens.dbSNP.20101109,SIFT.Hsapiens.dbSNP132,SIFT.Hsapiens.dbSNP137,PolyPhen.Hsapiens.dbSNP131,snpStats,ggplot2,BiocStyle |
SystemRequirements |
GNU使 |
增强了 |
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URL |
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全靠我 |
注释,cgdv17,CNVrd2,deepSNV,ensemblVEP,genotypeeval,HelloRanges,HTSeqGenie,myvariant,PolyPhen.Hsapiens.dbSNP131,PureCN,R453Plus1Toolbox,RareVariantVis,Rariant,seqCAT,测序,SIFT.Hsapiens.dbSNP132,SIFT.Hsapiens.dbSNP137,签名者,SomaticSignatures,StructuralVariantAnnotation,VariantFiltering,变体,VariantTools,VariantToolsData |
进口我 |
AllelicImbalance,APAlyzer,appreci8R,BadRegionFinder,BBCAnalyzer,biovizBase,biscuiteer,CNVfilteR,CopyNumberPlots,COSMIC.67,customProDB,DAMEfinder,decompTumor2Sig,DominoEffect,fcScan,FunciSNP,GA4GHclient,genbankr,GenomicFiles,GenVisR,ggbio,GGtools,gmapR,gQTLstats,gwascat,gwasurvivr,icetea,igvR,karyoploteR,ldblock,MADSEQ,methyAnalysis,MMAPPR2,motifbreakR,musicatk,MutationalPatterns,PGA,scoreInvHap,SigsPack,SNPhood,systemPipeR,TitanCNA,TVTB,Uniquorn,VCFArray,XCIR,YAPSA,yriMulti |
建议我 |
AnnotationHub,AshkenazimSonChr21,BiocParallel,cellbaseR,CrispRVariants,GenomicRanges,GenomicScores,GeuvadisTranscriptExpr,GWASTools,omicsPrint,podkat,旅游房车,SeqArray,飞溅,trackViewer,三人组,vtpnet |
链接到我 |
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构建报告 |
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包档案
遵循2021年欧洲杯比分预测
在R会话中使用此包的说明。