注释

DOI:10.18129 / B9.bioc.annotate

此包适用于Bioconductor的3.12版本;有关稳定的最新发布版本,请参见注释

微阵列注释

Bioconductor版本:3.12

使用R环境进行注释。

作者:R.绅士

维护者:Bioconductor包维护者< Bioconductor .org>的维护者

引用(从R中,输入引用(“注释”)):

安装

要安装此包,启动R(版本“4.0”)并输入:

如果(!requireNamespace("BiocManager", quiet = TRUE)) install.packages("BiocManager")

对于较老版本的R,请参考相应的Bioconductor释放

文档

要查看系统中安装的此包版本的文档,请从R开始并输入:

browseVignettes(“注释”)

PDF R脚本 注释的概述
PDF R脚本 GO的基本用法
PDF R脚本 获取HTML输出
PDF R脚本 如何使用染色体信息
PDF R脚本 HOWTO:使用在线查询工具
PDF R脚本 使用Affymetrix探针级数据
PDF R脚本 使用数据包
PDF R脚本 使用同源包
PDF 参考手册
文本 新闻

细节

biocViews 注释通路软件
版本 1.68.0
在Bioconductor公司 BioC 1.6 (R-2.1)或更早的版本(> 16年)
许可证 艺术- 2.0
取决于 R (>= 2.10),AnnotationDbi(> = 1.27.5),XML
进口 BiobaseDBIxtable,图形,utils, stats,方法,BiocGenerics(> = 0.13.8),httr
链接
建议 hgu95av2.dbgenefilterBiostrings(> = 2.25.10),IRangesrae230a.dbrae230aprobetkWidgetsGO.dborg.Hs.eg.dborg.Mm.eg.dbhom.Hs.inp.dbhumanCHRLOCRgraphvizRUnit
SystemRequirements
增强了
URL
全靠我 ChromHeatMapGeneAnswersgeneplotterGOSimGSEABase染色体组型macatMGFMMineICAMLInterfacesNeve2006PCphenophenoTestPREDAPREDAsampledataRpsiXMLsampleClassifierScISISemDist
进口我 咖啡馆类别categoryComparecncodelinkdebrowserDrugVsDiseaseGeneAnswersgenefilterGlobalAncovaglobaltestGOstats光民methyAnalysismethylumiMGFRPathwaySplicephenoTestqpgraphReportingToolsScISIsystemPipeRtigreUMI4Cats
建议我 adme16cod.dbag.dbath1121501.dbBiocCaseStudiesBiocGenericsbiomaRtbovine.dbcanine.dbcanine2.dbcelegans.dbchicken.dbclariomdhumanprobeset.dbclariomdhumantranscriptcluster.dbclariomshumanhttranscriptcluster.dbclariomshumantranscriptcluster.dbclariomsmousehttranscriptcluster.dbclariomsmousetranscriptcluster.dbclariomsrathttranscriptcluster.dbclariomsrattranscriptcluster.dbdrosgenome1.dbdrosophila2.dbecoli2.dbGenomicRangesGGHumanMethCancerPanelv1.dbGSARGSEAlmh10kcod.dbh20kcod.dbhcg110.dbhgfocus.dbhgu133a.dbhgu133a2.dbhgu133b.dbhgu133plus2.dbhgu219.dbhgu95a.dbhgu95av2.dbhgu95b.dbhgu95c.dbhgu95d.dbhgu95e.dbhguatlas13k.dbhgubeta7.dbhguDKFZ31.dbhgug4100a.dbhgug4101a.dbhgug4110b.dbhgug4111a.dbhgug4112a.dbhgug4845a.dbhguqiagenv3.dbhi16cod.dbhmdbQueryhs25kresogen.dbHs6UG171.dbHsAgilentDesign026652.dbhta20probeset.dbhta20transcriptcluster.dbhthgu133a.dbhthgu133b.dbhu35ksuba.dbhu35ksubb.dbhu35ksubc.dbhu35ksubd.dbhu6800.dbhuex10stprobeset.dbhuex10sttranscriptcluster.dbhugene10stprobeset.dbhugene10sttranscriptcluster.dbhugene11stprobeset.dbhugene11sttranscriptcluster.dbhugene20stprobeset.dbhugene20sttranscriptcluster.dbhugene21stprobeset.dbhugene21sttranscriptcluster.dbHuO22.dbhwgcod.dbIlluminaHumanMethylation27k.dbilluminaHumanv1.dbilluminaHumanv2.dbilluminaHumanv2BeadID.dbilluminaHumanv3.dbilluminaHumanv4.dbilluminaHumanWGDASLv3.dbilluminaHumanWGDASLv4.dbilluminaMousev1.dbilluminaMousev1p1.dbilluminaMousev2.dbilluminaRatv1.dbindac.dbJazaeriMetaData.dbLAPOINTE.dblumiHumanAll.dblumiMouseAll.dblumiRatAll.dbm10kcod.dbm20kcod.dbmaigesPackmetagenomeSeqmgu74a.dbmgu74av2.dbmgu74b.dbmgu74bv2.dbmgu74c.dbmgu74cv2.dbmguatlas5k.dbmgug4104a.dbmgug4120a.dbmgug4121a.dbmgug4122a.dbmi16cod.dbmiRBaseVersions.db中长期规划mm24kresogen.dbMmAgilentDesign026655.dbmoe430a.dbmoe430b.dbmoex10stprobeset.dbmoex10sttranscriptcluster.dbmogene10stprobeset.dbmogene10sttranscriptcluster.dbmogene11stprobeset.dbmogene11sttranscriptcluster.dbmogene20stprobeset.dbmogene20sttranscriptcluster.dbmogene21stprobeset.dbmogene21sttranscriptcluster.dbmouse4302.dbmouse430a2.dbmpedbarray.dbmta10probeset.dbmta10transcriptcluster.dbmu11ksuba.dbmu11ksubb.dbMu15v1.dbmu19ksuba.dbmu19ksubb.dbmu19ksubc.dbMu22v3.dbmwgcod.dbNorway981.dbnugohs1a520180.dbnugomm1a520177.dbOperonHumanV3.dborg.Ag.eg.dborg.At.tair.dborg.Bt.eg.dborg.Ce.eg.dborg.Cf.eg.dborg.Dm.eg.dborg.Dr.eg.dborg.EcK12.eg.dborg.EcSakai.eg.dborg.Gg.eg.dborg.Hs.eg.dborg.Mm.eg.dborg.Mmu.eg.dborg.Pf.plasmo.dborg.Pt.eg.dborg.Rn.eg.dborg.Sc.sgd.dborg.Ss.eg.dborg.Xl.eg.db网页排名PartheenMetaData.dbpcxnpedbarrayv10.dbpedbarrayv9.dbPOCRCannotation.dbporcine.db彪马r10kcod.dbrae230a.dbrae230b.dbraex10stprobeset.dbraex10sttranscriptcluster.dbragene10stprobeset.dbragene10sttranscriptcluster.dbragene11stprobeset.dbragene11sttranscriptcluster.dbragene20stprobeset.dbragene20sttranscriptcluster.dbragene21stprobeset.dbragene21sttranscriptcluster.dbrat2302.dbrgu34a.dbrgu34b.dbrgu34c.dbrguatlas4k.dbrgug4105a.dbrgug4130a.dbrgug4131a.dbri16cod.dbRnAgilentDesign028282.dbRnBeadsrnu34.dbRoberts2005Annotation.dbrta10probeset.dbrta10transcriptcluster.dbrtu34.dbrwgcod.dbSHDZ.dbsiggenesSummarizedExperimentu133x3p.dbxlaevis.dbyeast2.dbygs98.dbzebrafish.db
给我的链接
构建报告

包档案

遵循2021年欧洲杯比分预测 在R会话中使用这个包的说明。

源包 annotate_1.68.0.tar.gz
Windows二进制 annotate_1.68.0.zip
macOS 10.13 (High Sierra) annotate_1.68.0.tgz
源库 Git克隆https://git.bioconductor.org/packages/annotate
源存储库(开发人员访问) Git克隆git@git.bioconductor.org:packages/annotate
包短Url //www.andersvercelli.com/packages/annotate/
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