This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, seeSpatialCPie.
Bioconductor version: 3.14
SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationships between clusters in order to guide the user during cluster identification and other downstream applications. The package is built around a shiny "gadget" to allow the exploration of the data with multiple plots in parallel and an interactive UI. The user can easily toggle between different cluster resolutions in order to choose the most appropriate visual cues.
Author: Joseph Bergenstraahle [aut, cre]
Maintainer: Joseph Bergenstraahle
Citation (from within R, entercitation("SpatialCPie")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SpatialCPie")
For older versions of R, please refer to the appropriateBioconductor release.
查看文档的版本包age installed in your system, start R and enter:
browseVignettes("SpatialCPie")
HTML | R Script | SpatialCPie |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | Clustering,RNASeq,Software,Transcriptomics |
Version | 1.10.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (3 years) |
License | MIT + fileLICENSE |
Depends | R (>= 3.6) |
Imports | colorspace(>= 1.3-2),data.table(>= 1.12.2),digest(>= 0.6.21),dplyr(>= 0.7.6),ggforce(>= 0.3.0),ggiraph(>= 0.5.0),ggplot2(>= 3.0.0),ggrepel(>= 0.8.0), grid (>= 3.5.1),igraph(>= 1.2.2),lpSolve(>= 5.6.13), methods (>= 3.5.0),purrr(>= 0.2.5),readr(>= 1.1.1),rlang(>= 0.2.2),shiny(>= 1.1.0),shinycssloaders(>= 0.2.0),shinyjs(>= 1.0),shinyWidgets(>= 0.4.8), stats (>= 3.6.0),SummarizedExperiment(>= 1.10.1),tibble(>= 1.4.2),tidyr(>= 0.8.1),tidyselect(>= 0.2.4), tools (>= 3.6.0), utils (>= 3.5.0),zeallot(>= 0.1.0) |
LinkingTo | |
Suggests | BiocStyle(>= 2.8.2),jpeg(>= 0.1-8),knitr(>= 1.20),rmarkdown(>= 1.10),testthat(>= 2.0.0) |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
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Build Report |
Follow2021年欧洲杯比分预测 instructions to use this package in your R session.
Source Package | SpatialCPie_1.10.0.tar.gz |
Windows Binary | SpatialCPie_1.10.0.zip |
macOS 10.13 (High Sierra) | SpatialCPie_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SpatialCPie |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SpatialCPie |
Package Short Url | //www.andersvercelli.com/packages/SpatialCPie/ |
Package Downloads Report | Download Stats |
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