TFEA.ChIP

DOI:10.18129/B9.bioc.TFEA.ChIP

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, seeTFEA.ChIP.

Analyze Transcription Factor Enrichment

Bioconductor version: 3.14

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

Author: Laura Puente Santamaría, Luis del Peso

Maintainer: Laura Puente Santamaría

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TFEA.ChIP")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("TFEA.ChIP")

HTML	R Script	TFEA.ChIP: a tool kit for transcription factor enrichment
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq,GeneRegulation,GeneSetEnrichment,ImmunoOncology,RNASeq,Sequencing,Software,Transcription,Transcriptomics
Version	1.14.0
In Bioconductor since	BioC 3.7 (R-3.5) (4 years)
License	Artistic-2.0
Depends	R (>= 3.3)
Imports	GenomicRanges,IRanges,biomaRt,GenomicFeatures, grDevices,dplyr, stats, utils,R.utils, methods,org.Hs.eg.db
LinkingTo
Suggests	knitr,rmarkdown,S4Vectors,plotly,scales,tidyr,ggplot2,GSEABase,DESeq2,BiocGenerics,ggrepel,rcompanion,TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	TFEA.ChIP_1.14.0.tar.gz
Windows Binary	TFEA.ChIP_1.14.0.zip
macOS 10.13 (High Sierra)	TFEA.ChIP_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TFEA.ChIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TFEA.ChIP
Package Short Url	//www.andersvercelli.com/packages/TFEA.ChIP/
Package Downloads Report	Download Stats