ggcyto

DOI:10.18129/B9.bioc.ggcyto

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, seeggcyto.

Visualize Cytometry data with ggplot

Bioconductor version: 3.14

With the dedicated fortify method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.

Author: Mike Jiang

Maintainer: Mike Jiang ,Jake Wagner

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ggcyto")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("ggcyto")

HTML	R Script	Feature summary of ggcyto
HTML	R Script	Quick plot for cytometry data
HTML	R Script	Visualize flowSet with ggcyto
HTML	R Script	Visualize GatingSet with ggcyto
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays,FlowCytometry,ImmunoOncology,Infrastructure,Software,Visualization
Version	1.22.0
In Bioconductor since	BioC 3.3 (R-3.3) (6 years)
License	Artistic-2.0
Depends	methods,ggplot2(>= 3.3.0),flowCore(>= 1.41.5),ncdfFlow(>= 2.17.1),flowWorkspace(>= 3.33.1)
Imports	plyr,scales,hexbin,data.table,RColorBrewer,gridExtra,rlang
LinkingTo
Suggests	testthat,flowWorkspaceData,knitr,rmarkdown,flowStats,openCyto,flowViz,ggridges,vdiffr
SystemRequirements
Enhances
URL	https://github.com/RGLab/ggcyto/issues
Depends On Me
Imports Me	CytoML
Suggests Me	CATALYST,flowCore,flowStats,flowTime,flowWorkspace,openCyto
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	ggcyto_1.22.0.tar.gz
Windows Binary	ggcyto_1.22.0.zip
macOS 10.13 (High Sierra)	ggcyto_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ggcyto
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ggcyto
Package Short Url	//www.andersvercelli.com/packages/ggcyto/
Package Downloads Report	Download Stats