miaViz

DOI:10.18129/B9.bioc.miaViz

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, seemiaViz.

Microbiome Analysis Plotting and Visualization

Bioconductor version: 3.14

The miaViz package implements plotting function to work with TreeSummarizedExperiment and related objects in a context of microbiome analysis. Among others this includes plotting tree, graph and microbiome series data. The package is part of the broader miaverse framework.

Author: Felix G.M. Ernst [aut, cre], Tuomas Borman [aut], Leo Lahti [aut]

Maintainer: Felix G.M. Ernst

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("miaViz")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("miaViz")

HTML	R Script	miaViz
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Microbiome,Software,Visualization
Version	1.2.1
In Bioconductor since	BioC 3.13 (R-4.1) (1 year)
License	Artistic-2.0 | fileLICENSE
Depends	R (>= 4.0),SummarizedExperiment,TreeSummarizedExperiment,mia(>= 0.99),ggplot2,ggraph(>= 2.0)
Imports	methods, stats,S4Vectors,BiocGenerics,BiocParallel,DelayedArray,scater,ggtree,ggnewscale,viridis,tibble,tidytree,tidygraph,rlang,purrr,tidyr,dplyr,ape,DirichletMultinomial
LinkingTo
Suggests	knitr,rmarkdown,BiocStyle,testthat,patchwork,microbiomeDataSets
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	miaViz_1.2.1.tar.gz
Windows Binary	miaViz_1.2.1.zip(32- & 64-bit)
macOS 10.13 (High Sierra)	miaViz_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miaViz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miaViz
Package Short Url	//www.andersvercelli.com/packages/miaViz/
Package Downloads Report	Download Stats