wiggleplotr

DOI:10.18129/B9.bioc.wiggleplotr

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, seewiggleplotr.

Make read coverage plots from BigWig files

Bioconductor version: 3.14

Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.

Author: Kaur Alasoo [aut, cre]

Maintainer: Kaur Alasoo

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("wiggleplotr")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("wiggleplotr")

HTML	R Script	Introduction to wiggleplotr
PDF		Reference Manual
Text		NEWS

Details

biocViews	AlternativeSplicing,ChIPSeq,Coverage,GeneExpression,ImmunoOncology,RNASeq,Sequencing,Software,Transcription,Visualization
Version	1.18.0
In Bioconductor since	BioC 3.5 (R-3.4) (5 years)
License	Apache License 2.0
Depends	R (>= 3.6)
Imports	dplyr,ggplot2(>= 2.2.0),GenomicRanges,rtracklayer,cowplot,assertthat,purrr,S4Vectors,IRanges,GenomeInfoDb
LinkingTo
Suggests	knitr,rmarkdown,biomaRt,GenomicFeatures,testthat,ensembldb,EnsDb.Hsapiens.v86,org.Hs.eg.db,TxDb.Hsapiens.UCSC.hg38.knownGene,AnnotationDbi,AnnotationFilter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	wiggleplotr_1.18.0.tar.gz
Windows Binary	wiggleplotr_1.18.0.zip
macOS 10.13 (High Sierra)	wiggleplotr_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/wiggleplotr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/wiggleplotr
Package Short Url	//www.andersvercelli.com/packages/wiggleplotr/
Package Downloads Report	Download Stats