版本1.18.1 - - - - - - - - - - - - - o提高蛋白质推断。现在有两个选择——独特的肽或剃须刀。版本1.17.1 - - - - - - - - - - - - - o ImmunoOncology范围扩大的工具——发现罕见的事件,反映在蛋白质序列。1.15.1版本- - - - - - - - - - - - - o mzR现在添加扫描数量(s)的表表示mzIdentML对象。作为一个结果会产生一个错误在我的单元测试检查如果文件读取正确。固定这个检查更新后的散列。1.11.1版本- - - - - - - - - - - - - o开关从mclapply parLapply optimizaition在过滤器。修复一个缺陷”断言失败kmp_runtime.cpp (6480): __kmp_thread_pool = = __null。”Also allows to run parallel on Window OS Version 1.7.3 ------------- o Logical error fix in PSM FDR calculation. Prior it ignored redundancy in peptide to protein mapping. Now protein accession are discarded and unique rows considered before compuring the FDR. o Added unit test to cover new PSM FDR calculation. Version 1.7.2 ------------- o added high performance parser based on mzR::openIDFile Version 1.7.1 ------------- o added infer_parsimonious_accessions method o version leap from 1.3.1 to 1.7.1 to catch up with Bioconductor o fixed conflict between reshape2 and data.table Version 1.3.1 ------------- o S4 methods "accessions" and "proteins" outsourced to ProtGenerics Version 1.1.6 ------------- o Added explicit mc.cores argument for "Grid" type of optimization o Fix of trimming to basename on POSIX Version 1.1.5 ------------- o Always trimming spectrumFile and databaseFile to basename after reading data from mzIdentML files. Version 1.1.4 ------------- o Catching up with changes in mzID package version 1.5.3 Version 1.1.3 ------------- o Updated data, documentation and unit test to reflect the latest changes in mzID Version 1.1.2 ------------- o id_quality and evaluate_filter may have multiple values for the level argument. By default it is all three: "PSM", "peptide" and "accession". The return value for both methods is switched to matrices. o added Laurent Gatto as a contributor Version 1.1.1 ------------- o fix mishandling PSM o use mzR::psms generic Version 1.1.0 ------------- o Bumping versions after creating 3.0 release branch. Version 0.99.3 -------------- o Rcpp back into "Depends" Version 0.99.2 -------------- o Updated Rcpp dependency o Updated contact info to match the bioc-devel mailing list Version 0.99.1 -------------- o Updated dependency on mzID version Version 0.99.0 -------------- o Minor bug fixes o Added unit tests for filter optimization and assessment of non-tryptic and missed cleavages o Version bump for Bioconductor submission Version 0.1.0 -------------- o First release version