# # # R代码从装饰图案的illuminaio来源。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:风格# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # BiocStyle::乳胶()# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:loadData # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(illuminaio)库(IlluminaDataTestFiles) idatFile < -系统。文件(“extdata”、“idat”,“4343238080 _a_grn。idat”,包= " IlluminaDataTestFiles”) idat <——readIDAT (idatFile) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:exploreData # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #名称(idat) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:printQuants # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # idatData <——美元idat宽客头(idatData) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:readGenotyping # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # genotypeIdatFile < -系统。文件(“extdata”、“idat”,“5723646052 _r02c02_grn。idat”,包= " IlluminaDataTestFiles”) genotypeIdat <——readIDAT (genotypeIdatFile)名称(genotypeIdat) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:printGenotypingQuants # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #头(genotypeIdat数量化投资美元)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:ImportGenomeStudio # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # gsFile < -系统。文件(“extdata”、“gs”、“4343238080 _a_probesummary.txt。广州”,包= " IlluminaDataTestFiles”) gStudio < - read.delim (gsFile, 9 =“\ t”,头= TRUE) idatData < - idatData[这(idatData (,“CodesBinData”) % % gStudio [" ProbeID "]),] gStudio <——gStudio[匹配(idatData [,“CodesBinData”], gStudio [" ProbeID "]),) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块8号:figureComparingValues # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # par (mfrow = c(1、2)情节(idatData [,“MeanBinData”], gStudio X4343238080_A [。”AVG_Signal”], xlab = " illuminaio”, ylab = " GenomeStudio”)相同(idatData [,“MeanBinData”], gStudio [" X4343238080_A.AVG_Signal "])嘘(idatData [“MeanBinData”] - gStudio X4343238080_A [。”AVG_Signal”),休息时间= 100,主要= " ",xlab = "区别")# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块9号:sessionInfo # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # toLatex (sessionInfo ())