SNPlocs.Hsapiens.dbSNP149.GRCh38

DOI:10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP149.GRCh38

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, seeSNPlocs.Hsapiens.dbSNP149.GRCh38.

SNP locations for Homo sapiens (dbSNP Build 149)

Bioconductor version: 3.14

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: H. Pagès

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SNPlocs.Hsapiens.dbSNP149.GRCh38")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData,Genetics,Homo_sapiens,SNPlocs
Version	0.99.20
License	Artistic-2.0
Depends	BSgenome(>= 1.43.4)
Imports	methods, utils,BiocGenerics,S4Vectors,IRanges,GenomeInfoDb,GenomicRanges,BSgenome
LinkingTo
Suggests	Biostrings,BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	MafDb.1Kgenomes.phase1.GRCh38,MafDb.1Kgenomes.phase3.GRCh38,MafDb.ExAC.r1.0.GRCh38,MafDb.ExAC.r1.0.nonTCGA.GRCh38,MafDb.gnomAD.r2.1.GRCh38,MafDb.gnomADex.r2.1.GRCh38,MafDb.TOPMed.freeze5.hg38,MafH5.gnomAD.v3.1.1.GRCh38
Links To Me

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url	//www.andersvercelli.com/packages/SNPlocs.Hsapiens.dbSNP149.GRCh38/
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