## try http:// if https:// URLs are not supported source("//www.andersvercelli.com/biocLite.R") biocLite("trio")

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, seetrio.

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

Bioconductor version: 3.2

Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

Author: Holger Schwender, Qing Li, Philipp Berger, Christoph Neumann, Margaret Taub, Ingo Ruczinski

Maintainer: Holger Schwender

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.andersvercelli.com/biocLite.R") biocLite("trio")

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("trio")

PDF		Trio Logic Regression and genotypic TDT
PDF		Reference Manual

Details

biocViews	GeneticVariability,Genetics,Microarray,SNP,Software
Version	3.8.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	LGPL-2
Depends	R (>= 3.0.1)
Imports
LinkingTo
Suggests	survival,haplo.stats,mcbiopi,siggenes, splines,LogicReg(>= 1.5.3),logicFS(>= 1.28.1),KernSmooth,VariantAnnotation
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Package Source	trio_3.8.0.tar.gz
Windows Binary	trio_3.8.0.zip
Mac OS X 10.6 (Snow Leopard)	trio_3.8.0.tgz
Mac OS X 10.9 (Mavericks)	trio_3.8.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/trio/tree/release-3.2
Package Short Url	//www.andersvercelli.com/packages/trio/
Package Downloads Report	Download Stats