## try http:// if https:// URLs are not supported source("//www.andersvercelli.com/biocLite.R") biocLite("clusterProfiler")

DOI:10.18129/B9.bioc.clusterProfiler

statistical analysis and visualization of functional profiles for genes and gene clusters

Bioconductor version: Release (3.5)

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu [aut, cre], Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)

Maintainer: Guangchuang Yu

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.andersvercelli.com/biocLite.R") biocLite("clusterProfiler")

Documentation

HTML	R Script	Statistical analysis and visualization of functional profiles for genes and gene clusters
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation,Clustering,GO,GeneSetEnrichment,KEGG,MultipleComparison,Pathways,Reactome,Software,Visualization
Version	3.4.4
In Bioconductor since	BioC 2.8 (R-2.13) (6.5 years)
License	Artistic-2.0
Depends	R (>= 3.3.1),DOSE(>= 3.1.3)
Imports	AnnotationDbi,ggplot2,GO.db,GOSemSim(>= 2.0.0),magrittr, methods,plyr,qvalue,rvcheck, stats, stats4,tidyr, utils
LinkingTo
Suggests	AnnotationHub,GSEABase,KEGG.db,knitr,org.Hs.eg.db,prettydoc,pathview,ReactomePA,testthat,topGO
SystemRequirements
Enhances
URL	https://guangchuangyu.github.io/clusterProfiler
BugReports	https://github.com/GuangchuangYu/clusterProfiler/issues
Depends On Me
Imports Me	bioCancer,debrowser,eegc,LINC,MoonlightR,TCGAbiolinksGUI
Suggests Me	ChIPseeker,DOSE,GOSemSim,isomiRs,ReactomePA,TCGAbiolinks
Build Report

Package Archives

Follow2021年欧洲杯比分预测 指令使用这个包in your R session.

Source Package	clusterProfiler_3.4.4.tar.gz
Windows Binary	clusterProfiler_3.4.4.zip
Mac OS X 10.11 (El Capitan)	clusterProfiler_3.4.4.tgz
Source Repository	git clone https://git.bioconductor.org/packages/clusterProfiler
Package Short Url	//www.andersvercelli.com/packages/clusterProfiler/
Package Downloads Report	Download Stats