AnnotationDbi

DOI:10.18129 / B9.bioc.AnnotationDbi

注释数据库接口

Bioconductor版本:Release (3.6)

提供使用SQLite数据存储的注释数据包的用户界面和数据库连接代码。

作者:Hervé Pagès, Marc Carlson, Seth Falcon，李念华

维护者:Bioconductor包维护者< Bioconductor .org>的维护者

安装

要安装这个包，开始R，然后输入:

##尝试http://if https:// url不支持source("//www.andersvercelli.com/biocLite.R") biocLite("AnnotationDbi")

文档

要查看系统中安装的此包版本的文档，请从R开始并输入:

browseVignettes(“AnnotationDbi”)

PDF	R脚本	1.Bioconductor注释包简介
PDF	R脚本	2.(已弃用)如何从".db"注释包中使用bimaps
PDF		参考手册
文本		新闻
视频		使用AnnotationDb对象

细节

biocViews	注释，GenomeAnnotation，微阵列，测序，软件
版本	1.40.0
Bioconductor自	BioC 2.1 (R-2.6)(10.5年)
许可证	艺术- 2.0
取决于	R(>= 2.7.0)，方法，utils, stats4，BiocGenerics(> = 0.23.1),Biobase(> = 1.17.0),IRanges
进口	方法,跑龙套,DBI，RSQLitestats4,BiocGenerics，Biobase，S4Vectors(> = 0.9.25),IRanges
链接
建议	DBI(> = 0.2 4),RSQLite(> = 0.6 4),hgu95av2.db，GO.db，org.Sc.sgd.db，org.At.tair.db，KEGG.db，RUnit，TxDb.Hsapiens.UCSC.hg19.knownGene，hom.Hs.inp.db，org.Hs.eg.db，reactome.db，AnnotationForge，图，EnsDb.Hsapiens.v75，BiocStyle，knitr
SystemRequirements
增强了
URL
取决于我	a4Base，a4Preproc，adme16cod.db，ag.db，agprobe，注释，AnnotationForge，AnnotationFuncs，anopheles.db0，arabidopsis.db0，ath1121501.db，ath1121501probe，吸引，barley1probe，bovine.db，bovine.db0，bovineprobe，bsubtilisprobe，canine.db，canine.db0，canine2.db，canine2probe，canineprobe，类别，celegans.db，celegansprobe，chicken.db，chicken.db0，chickenprobe，嵌合体，chimp.db0，ChromHeatMap，citrusprobe，clariomdhumanprobeset.db，clariomdhumantranscriptcluster.db，clariomshumanhttranscriptcluster.db，clariomshumantranscriptcluster.db，clariomsmousehttranscriptcluster.db，clariomsmousetranscriptcluster.db，clariomsrathttranscriptcluster.db，clariomsrattranscriptcluster.db，cottonprobe，customProDB，DEXSeq，DO.db，drosgenome1.db，drosgenome1probe，drosophila2.db，drosophila2probe，ecoli2.db，ecoli2probe，ecoliasv2probe，ecoliK12.db0，ecoliprobe，ecoliSakai.db0，EGSEA，eisa，ExpressionView，有限元法，fly.db0，GenomicFeatures，GGdata，GGHumanMethCancerPanelv1.db，GO.db，GOFunction，goProfiles，GSReg，h10kcod.db，h20kcod.db，hcg110.db，hcg110probe，hgfocus.db，hgfocusprobe，hgu133a.db，hgu133a2.db，hgu133a2probe，hgu133aprobe，hgu133atagprobe，hgu133b.db，hgu133bprobe，hgu133plus2.db，hgu133plus2probe，hgu219.db，hgu219probe，hgu95a.db，hgu95aprobe，hgu95av2.db，hgu95av2probe，hgu95b.db，hgu95bprobe，hgu95c.db，hgu95cprobe，hgu95d.db，hgu95dprobe，hgu95e.db，hgu95eprobe，hguatlas13k.db，hgubeta7.db，hguDKFZ31.db，hgug4100a.db，hgug4101a.db，hgug4110b.db，hgug4111a.db，hgug4112a.db，hgug4845a.db，hguqiagenv3.db，hi16cod.db，hom.At.inp.db，hom.Ce.inp.db，hom.Dm.inp.db，hom.Dr.inp.db，hom.Hs.inp.db，hom.Mm.inp.db，hom.Rn.inp.db，hom.Sc.inp.db，Homo.sapiens，hs25kresogen.db，Hs6UG171.db，HsAgilentDesign026652.db，hta20probeset.db，hta20transcriptcluster.db，hthgu133a.db，hthgu133aprobe，hthgu133b.db，hthgu133bprobe，hthgu133pluspmprobe，htmg430aprobe，htmg430bprobe，htmg430pmprobe，htrat230pmprobe，htratfocusprobe，hu35ksuba.db，hu35ksubaprobe，hu35ksubb.db，hu35ksubbprobe，hu35ksubc.db，hu35ksubcprobe，hu35ksubd.db，hu35ksubdprobe，hu6800.db，hu6800probe，huex10stprobeset.db，huex10sttranscriptcluster.db，HuExExonProbesetLocation，HuExExonProbesetLocationHg18，HuExExonProbesetLocationHg19，hugene10stprobeset.db，hugene10sttranscriptcluster.db，hugene10stv1probe，hugene11stprobeset.db，hugene11sttranscriptcluster.db，hugene20stprobeset.db，hugene20sttranscriptcluster.db，hugene21stprobeset.db，hugene21sttranscriptcluster.db，human.db0，HuO22.db，hwgcod.db，IlluminaHumanMethylation27k.db，IlluminaHumanMethylation450kprobe，illuminaHumanv1.db，illuminaHumanv2.db，illuminaHumanv2BeadID.db，illuminaHumanv3.db，illuminaHumanv4.db，illuminaHumanWGDASLv3.db，illuminaHumanWGDASLv4.db，illuminaMousev1.db，illuminaMousev1p1.db，illuminaMousev2.db，illuminaRatv1.db，indac.db，JazaeriMetaData.db，KEGG.db，LAPOINTE.db，lumiHumanAll.db，lumiHumanIDMapping，lumiMouseAll.db，lumiMouseIDMapping，lumiRatAll.db，lumiRatIDMapping，m10kcod.db，m20kcod.db，maizeprobe，malaria.db0，maPredictDSC，medicagoprobe，MGFM，mgu74a.db，mgu74aprobe，mgu74av2.db，mgu74av2probe，mgu74b.db，mgu74bprobe，mgu74bv2.db，mgu74bv2probe，mgu74c.db，mgu74cprobe，mgu74cv2.db，mgu74cv2probe，mguatlas5k.db，mgug4104a.db，mgug4120a.db，mgug4121a.db，mgug4122a.db，mi16cod.db，mirbase.db，mirna10probe，miRNAtap，中长期规划，mm24kresogen.db，MmAgilentDesign026655.db，moe430a.db，moe430aprobe，moe430b.db，moe430bprobe，moex10stprobeset.db，moex10sttranscriptcluster.db，MoExExonProbesetLocation，mogene10stprobeset.db，mogene10sttranscriptcluster.db，mogene10stv1probe，mogene11stprobeset.db，mogene11sttranscriptcluster.db，mogene20stprobeset.db，mogene20sttranscriptcluster.db，mogene21stprobeset.db，mogene21sttranscriptcluster.db，mouse.db0，mouse4302.db，mouse4302probe，mouse430a2.db，mouse430a2probe，mpedbarray.db，mta10probeset.db，mta10transcriptcluster.db，mu11ksuba.db，mu11ksubaprobe，mu11ksubb.db，mu11ksubbprobe，Mu15v1.db，mu19ksuba.db，mu19ksubb.db，mu19ksubc.db，Mu22v3.db，Mus.musculus，mwgcod.db，Norway981.db，nugohs1a520180.db，nugohs1a520180probe，nugomm1a520177.db，nugomm1a520177probe，OperonHumanV3.db，org.Ag.eg.db，org.At.tair.db，org.Bt.eg.db，org.Ce.eg.db，org.Cf.eg.db，org.Dm.eg.db，org.Dr.eg.db，org.EcK12.eg.db，org.EcSakai.eg.db，org.Gg.eg.db，org.Hs.eg.db，org.Mm.eg.db，org.Mmu.eg.db，org.Pf.plasmo.db，org.Pt.eg.db，org.Rn.eg.db，org.Sc.sgd.db，org.Ss.eg.db，org.Xl.eg.db，OrganismDbi，paeg1aprobe，PAnnBuilder，PANTHER.db，PartheenMetaData.db，pathRender，pedbarrayv10.db，pedbarrayv9.db，PFAM.db，PGSEA，pig.db0，plasmodiumanophelesprobe，POCRCannotation.db，poplarprobe，porcine.db，porcineprobe，primeviewprobe，proBAMr，r10kcod.db，rae230a.db，rae230aprobe，rae230b.db，rae230bprobe，raex10stprobeset.db，raex10sttranscriptcluster.db，RaExExonProbesetLocation，ragene10stprobeset.db，ragene10sttranscriptcluster.db，ragene10stv1probe，ragene11stprobeset.db，ragene11sttranscriptcluster.db，ragene20stprobeset.db，ragene20sttranscriptcluster.db，ragene21stprobeset.db，ragene21sttranscriptcluster.db，rat.db0，rat2302.db，rat2302probe，rattoxfxprobe，Rattus.norvegicus，reactome.db，rgu34a.db，rgu34aprobe，rgu34b.db，rgu34bprobe，rgu34c.db，rgu34cprobe，rguatlas4k.db，rgug4105a.db，rgug4130a.db，rgug4131a.db，rhesus.db0，rhesusprobe，ri16cod.db，riceprobe，RnAgilentDesign028282.db，rnu34.db，rnu34probe，Roberts2005Annotation.db，RpsiXML，rta10probeset.db，rta10transcriptcluster.db，rtu34.db，rtu34probe，rwgcod.db，安全，saureusprobe，SemDist，SHDZ.db，soybeanprobe，sugarcaneprobe，targetscan.Hs.eg.db，targetscan.Mm.eg.db，test3probe，tinesath1probe，tomatoprobe，topGO，u133x3p.db，u133x3pprobe，vitisviniferaprobe，wheatprobe，worm.db0，xenopus.db0，xenopuslaevisprobe，xlaevis.db，xlaevis2probe，xtropicalisprobe，yeast.db0，yeast2.db，yeast2probe，ygs98.db，ygs98probe，zebrafish.db，zebrafish.db0，zebrafishprobe
进口我	adme16cod.db，adSplit，affycoretools，ag.db，agcdf，AllelicImbalance，annaffy，AnnotationHub，AnnotationHubData，annotatr，anopheles.db0，arabidopsis.db0，ASpli，ath1121501.db，ath1121501cdf，barley1cdf，beadarray，biomaRt，生命网络，biovizBase，bovine.db，bovine.db0，bovinecdf，bsubtiliscdf，bumphunter，CancerMutationAnalysis，canine.db，canine.db0，canine2.db，canine2cdf，caninecdf，categoryCompare，ccmap，celegans.db，celeganscdf，cellity，cheung2010，chicken.db，chicken.db0，chickencdf，chimeraviz，chimp.db0，chipenrich，chipenrich.data，ChIPpeakAnno，ChIPseeker，citruscdf，clariomdhumanprobeset.db，clariomdhumantranscriptcluster.db，clariomshumanhttranscriptcluster.db，clariomshumantranscriptcluster.db，clariomsmousehttranscriptcluster.db，clariomsmousetranscriptcluster.db，clariomsrathttranscriptcluster.db，clariomsrattranscriptcluster.db，clusterProfiler，CoCiteStats，compEpiTools，cottoncdf，crisprseekplus，CrispRVariants，crossmeta，csaw，customProDB，cyp450cdf，DAPAR，debrowser，derfinder，DeSousa2013，DO.db，domainsignatures，剂量，drosgenome1.db，drosgenome1cdf，drosophila2.db，drosophila2cdf，dSimer，ecoli2.db，ecoli2cdf，ecoliasv2cdf，ecolicdf，ecoliK12.db0，ecoliSakai.db0，EDASeq，eegc，EnrichmentBrowser，ensembldb，erma，esATAC，ExpressionView，FDb.FANTOM4.promoters.hg19，FDb.InfiniumMethylation.hg18，FDb.InfiniumMethylation.hg19，FDb.UCSC.snp135common.hg19，FDb.UCSC.snp137common.hg19，FDb.UCSC.tRNAs，fly.db0，GA4GHshiny，计，gCMAP，gCMAPWeb，genefilter，geneplotter，geneXtendeR，GenVisR，GGBase，ggbio，GGHumanMethCancerPanelv1.db，GGtools，GlobalAncova，globaltest，GO.db，GOFunction，还装有，GOSemSim，goseq，GOSim，goSTAG，GOstats，goTools，gp53cdf，gQTLstats，石墨，GSEABase，Gviz，gwascat，h10kcod.db，h20kcod.db，hcg110.db，hcg110cdf，hgfocus.db，hgfocuscdf，hgu133a.db，hgu133a2.db，hgu133a2cdf，hgu133acdf，hgu133atagcdf，hgu133b.db，hgu133bcdf，hgu133plus2.db，hgu133plus2cdf，hgu219.db，hgu219cdf，hgu95a.db，hgu95acdf，hgu95av2.db，hgu95av2cdf，hgu95b.db，hgu95bcdf，hgu95c.db，hgu95ccdf，hgu95d.db，hgu95dcdf，hgu95e.db，hgu95ecdf，hguatlas13k.db，hgubeta7.db，hguDKFZ31.db，hgug4100a.db，hgug4101a.db，hgug4110b.db，hgug4111a.db，hgug4112a.db，hgug4845a.db，hguqiagenv3.db，hi16cod.db，hivprtplus2cdf，hom.At.inp.db，hom.Ce.inp.db，hom.Dm.inp.db，hom.Dr.inp.db，hom.Hs.inp.db，hom.Mm.inp.db，hom.Rn.inp.db，hom.Sc.inp.db，Homo.sapiens，hs25kresogen.db，Hs6UG171.db，HsAgilentDesign026652.db，Hspec，hspeccdf，hta20probeset.db，hta20transcriptcluster.db，hthgu133a.db，hthgu133acdf，hthgu133b.db，hthgu133bcdf，hthgu133pluspmcdf，htmg430acdf，htmg430bcdf，htmg430pmcdf，htrat230pmcdf，htratfocuscdf，HTSanalyzeR，hu35ksuba.db，hu35ksubacdf，hu35ksubb.db，hu35ksubbcdf，hu35ksubc.db，hu35ksubccdf，hu35ksubd.db，hu35ksubdcdf，hu6800.db，hu6800cdf，hu6800subacdf，hu6800subbcdf，hu6800subccdf，hu6800subdcdf，huex10stprobeset.db，huex10sttranscriptcluster.db，hugene10stprobeset.db，hugene10sttranscriptcluster.db，hugene10stv1cdf，hugene11stprobeset.db，hugene11sttranscriptcluster.db，hugene20stprobeset.db，hugene20sttranscriptcluster.db，hugene21stprobeset.db，hugene21sttranscriptcluster.db，human.db0，HuO22.db，hwgcod.db，理想的，IlluminaHumanMethylation27k.db，illuminaHumanv1.db，illuminaHumanv2.db，illuminaHumanv2BeadID.db，illuminaHumanv3.db，illuminaHumanv4.db，illuminaHumanWGDASLv3.db，illuminaHumanWGDASLv4.db，illuminaMousev1.db，illuminaMousev1p1.db，illuminaMousev2.db，illuminaRatv1.db，ima，indac.db，InPAS，interactiveDisplay，iva，JazaeriMetaData.db，KEGG.db，KEGGlincs，keggorthology，KEGGprofile，LAPOINTE.db，limmaGUI，光民，lumiHumanAll.db，lumiHumanIDMapping，lumiMouseAll.db，lumiMouseIDMapping，lumiRatAll.db，lumiRatIDMapping，m10kcod.db，m20kcod.db，maizecdf，malaria.db0，mAPKL，MCbiclust，mdgsa，medicagocdf，MeSHDbi，网格，MetaboSignal，methyAnalysis，methylumi，mgu74a.db，mgu74acdf，mgu74av2.db，mgu74av2cdf，mgu74b.db，mgu74bcdf，mgu74bv2.db，mgu74bv2cdf，mgu74c.db，mgu74ccdf，mgu74cv2.db，mgu74cv2cdf，mguatlas5k.db，mgug4104a.db，mgug4120a.db，mgug4121a.db，mgug4122a.db，mi16cod.db，MIGSA，MineICA，海市蜃楼，mirbase.db，miRBaseVersions.db，mirIntegrator，mirna102xgaincdf，mirna10cdf，mirna20cdf，miRNAmeConverter，miRNAtap.db，missMethyl，mm24kresogen.db，MmAgilentDesign026655.db，moe430a.db，moe430acdf，moe430b.db，moe430bcdf，moex10stprobeset.db，moex10sttranscriptcluster.db，mogene10stprobeset.db，mogene10sttranscriptcluster.db，mogene10stv1cdf，mogene11stprobeset.db，mogene11sttranscriptcluster.db，mogene20stprobeset.db，mogene20sttranscriptcluster.db，mogene21stprobeset.db，mogene21sttranscriptcluster.db，mouse.db0，mouse4302.db，mouse4302cdf，mouse430a2.db，mouse430a2cdf，mpedbarray.db，mta10probeset.db，mta10transcriptcluster.db，mu11ksuba.db，mu11ksubacdf，mu11ksubb.db，mu11ksubbcdf，Mu15v1.db，mu19ksuba.db，mu19ksubacdf，mu19ksubb.db，mu19ksubbcdf，mu19ksubc.db，mu19ksubccdf，Mu22v3.db，mu6500subacdf，mu6500subbcdf，mu6500subccdf，mu6500subdcdf，multiMiR，Mus.musculus，mvGST，mwgcod.db，NanoStringQCPro，Norway981.db，nugohs1a520180.db，nugohs1a520180cdf，nugomm1a520177.db，nugomm1a520177cdf，奥纳西斯，ontoProc，OperonHumanV3.db，org.Ag.eg.db，org.At.tair.db，org.Bt.eg.db，org.Ce.eg.db，org.Cf.eg.db，org.Dm.eg.db，org.Dr.eg.db，org.EcK12.eg.db，org.EcSakai.eg.db，org.Gg.eg.db，org.Hs.eg.db，org.Mm.eg.db，org.Mmu.eg.db，org.Pf.plasmo.db，org.Pt.eg.db，org.Rn.eg.db，org.Sc.sgd.db，org.Ss.eg.db，org.Xl.eg.db，Organism.dplyr，PADOG，paeg1acdf，PAnnBuilder，PartheenMetaData.db，pathview，PathwaySplice，pcaExplorer，pcaGoPromoter，PCpheno，pedbarrayv10.db，pedbarrayv9.db，PFAM.db，PGA，phenoTest，pig.db0，plasmodiumanophelescdf，POCRCannotation.db，PolyPhen.Hsapiens.dbSNP131，poplarcdf，porcine.db，porcinecdf，ppiData，primeviewcdf，pwOmics，qpgraph，r10kcod.db，rae230a.db，rae230acdf，rae230b.db，rae230bcdf，raex10stprobeset.db，raex10sttranscriptcluster.db，ragene10stprobeset.db，ragene10sttranscriptcluster.db，ragene10stv1cdf，ragene11stprobeset.db，ragene11sttranscriptcluster.db，ragene20stprobeset.db，ragene20sttranscriptcluster.db，ragene21stprobeset.db，ragene21sttranscriptcluster.db，rat.db0，rat2302.db，rat2302cdf，rattoxfxcdf，Rattus.norvegicus，美国广播公司，rCGH，reactome.db，ReactomePA，REDseq，ReportingTools，restfulSE，rgsepd，rgu34a.db，rgu34acdf，rgu34b.db，rgu34bcdf，rgu34c.db，rgu34ccdf，rguatlas4k.db，rgug4105a.db，rgug4130a.db，rgug4131a.db，rhesus.db0，rhesuscdf，ri16cod.db，ricecdf，RmiR.Hs.miRNA，RmiR.hsa，RnAgilentDesign028282.db，rnu34.db，rnu34cdf，Roberts2005Annotation.db，rta10probeset.db，rta10transcriptcluster.db，rTRM，rtu34.db，rtu34cdf，rwgcod.db，saureuscdf，ScISI，SGSeq，SHDZ.db，SIFT.Hsapiens.dbSNP132，SIFT.Hsapiens.dbSNP137，SLGI，击杀，soybeancdf，SpidermiR，StarBioTrek，sugarcanecdf，SVM2CRM，targetscan.Hs.eg.db，targetscan.Mm.eg.db，tenXplore，test1cdf，test2cdf，test3cdf，tigre，tomatocdf，ToPASeq，trackViewer，trena，TxDb.Athaliana.BioMart.plantsmart22，TxDb.Athaliana.BioMart.plantsmart25，TxDb.Athaliana.BioMart.plantsmart28，TxDb.Btaurus.UCSC.bosTau8.refGene，TxDb.Celegans.UCSC.ce11.refGene，TxDb.Celegans.UCSC.ce6.ensGene，TxDb.Cfamiliaris.UCSC.canFam3.refGene，TxDb.Dmelanogaster.UCSC.dm3.ensGene，TxDb.Dmelanogaster.UCSC.dm6.ensGene，TxDb.Drerio.UCSC.danRer10.refGene，TxDb.Ggallus.UCSC.galGal4.refGene，TxDb.Ggallus.UCSC.galGal5.refGene，TxDb.Hsapiens.BioMart.igis，TxDb.Hsapiens.UCSC.hg18.knownGene，TxDb.Hsapiens.UCSC.hg19.knownGene，TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts，TxDb.Hsapiens.UCSC.hg38.knownGene，TxDb.Mmulatta.UCSC.rheMac3.refGene，TxDb.Mmulatta.UCSC.rheMac8.refGene，TxDb.Mmusculus.UCSC.mm10.ensGene，TxDb.Mmusculus.UCSC.mm10.knownGene，TxDb.Mmusculus.UCSC.mm9.knownGene，TxDb.Ptroglodytes.UCSC.panTro4.refGene，TxDb.Rnorvegicus.BioMart.igis，TxDb.Rnorvegicus.UCSC.rn4.ensGene，TxDb.Rnorvegicus.UCSC.rn5.refGene，TxDb.Rnorvegicus.UCSC.rn6.refGene，TxDb.Scerevisiae.UCSC.sacCer2.sgdGene，TxDb.Scerevisiae.UCSC.sacCer3.sgdGene，TxDb.Sscrofa.UCSC.susScr3.refGene，u133aaofav2cdf，u133x3p.db，u133x3pcdf，UniProt.ws，VariantAnnotation，VariantFiltering，vitisviniferacdf，wheatcdf，worm.db0，xenopus.db0，xenopuslaeviscdf，xlaevis.db，xlaevis2cdf，xtropicaliscdf，ye6100subacdf，ye6100subbcdf，ye6100subccdf，ye6100subdcdf，yeast.db0，yeast2.db，yeast2cdf，ygs98.db，ygs98cdf，zebrafish.db，zebrafish.db0，zebrafishcdf
建议我	BiocCaseStudies，BiocGenerics，DEGreport，刨边机，esetVis，FGNet，fgsea，GA4GHclient，gCrisprTools，geecc，GeneAnswers，GeneRegionScan，GenomicRanges，limma，miRLAB，MmPalateMiRNA，益生元，益生元，oneChannelGUI，钢琴，Pigengene，pRoloc，qcmetrics，R3CPET，重新计票，RGalaxy，sigPathway，SummarizedExperiment，wiggleplotr
构建报告

包档案

遵循2021年欧洲杯比分预测 在R会话中使用这个包的说明。

源包	AnnotationDbi_1.40.0.tar.gz
Windows二进制	AnnotationDbi_1.40.0.zip
Mac OS X 10.11 (El Capitan)	AnnotationDbi_1.40.0.tgz
源库	git克隆https://git.bioconductor.org/packages/AnnotationDbi
包短Url	//www.andersvercelli.com/packages/AnnotationDbi/
包下载报告	下载数据