在mvGST版本0.99.3其他更改o删除suppressWarnings()从绘图调用interactiveGraph()，,箭头是“没有”,以避免琐碎的警告不定角的长度为零的箭头o清理使用开关()函数调用graphCell()和generateGeneSets()函数变化mvGST版本0.99.2 BUG修复o添加部分p.adjust.SFL有更好的错误捕获和限制条款在rawp名称(与专注水平方法)其他变化o添加suppressWarnings interactiveGraph()绘制调用(为了避免对边缘太琐碎的警告short to be plotted, which can happen when the number of GO terms is large in the call to graphCell) o Updated nested if/else statements to 'switch' function calls o Changed many 'cat' function calls to 'message' or 'warning' o Made 'for' loops more robust through use of 'seq_along', 'seq_len', and 'seq.int' CHANGES IN mvGST VERSION 0.99.1 OTHER CHANGES o Modified Description field in DESCRIPTION file o Reordered import() lines in NAMESPACE file in an attempt to avoid the following two Bioconductor warnings: Warning: multiple methods tables found for 'unsplit' Warning: replacing previous import by 'IRanges::unsplit' when loading 'GenomeInfoDb' (mvGST does not call 'unsplit' in any way) CHANGES IN mvGST VERSION 0.99.0 OTHER CHANGES o Submitted to Bioconductor 8 August 2014 CHANGES IN mvGST VERSION 0.1.3 NEW FEATURES o Added package vignette o Made graphCell more flexible with 'background' colors for graph elements of lesser interest. o Made p.adjust.SFL more flexible to control FWER at a user-supplied FWER (rather than automatic 0.05). o Implemented minsize and maxsize arguments to restrict sizes of gene sets of interest. BUG FIXES o N/A OTHER CHANGES o N/A CHANGES IN mvGST VERSION 0.1.2 NEW FEATURES o Added sample objects in data(mvGSTsamples) BUG FIXES o Edited pickOut function to appropriately handle non-multivariate profiles (i.e., where results.table has only one column, or where only one contrast is of interest) OTHER CHANGES o Cleaned up package dependencies in DESCRIPTION and NAMESPACE files o Cleaned up some .Rd files (especially examples) CHANGES IN mvGST VERSION 0.1.1 NEW FEATURES o The default method for accounting for gene name translation issues is now 'method = 2'. o The arguments 'contrasts' and 'gene.names' in 'profileTable' are now optional. The information may be passed to 'profileTable' as the row and column names of the argument 'pvals'. o The function 'pickOut' now returns a data frame with the GO descriptions and p-values for each contrasts tested as well as the GO ID. o The function 'graphCell' now has an optional argument that allows the user to enter the returns from 'pickOut' as the only argument. BUG FIXES o The output from 'profileTable' for 1 dimensional profiles now displays correctly. OTHER CHANGES o Minor clarifications in help files. o 'pvals' is now the first argument in 'profileTable'.