MBASED

DOI:10.18129/B9.bioc.MBASED

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, seeMBASED.

Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection

Bioconductor version: 3.7

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

Author: Oleg Mayba, Houston Gilbert

Maintainer: Oleg Mayba

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.andersvercelli.com/biocLite.R") biocLite("MBASED")

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("MBASED")

PDF	R Script	MBASED
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression,Sequencing,Software,Transcription
Version	1.14.0
In Bioconductor since	BioC 3.0 (R-3.1) (4 years)
License	Artistic-2.0
Depends	RUnit,BiocGenerics,BiocParallel,GenomicRanges,SummarizedExperiment
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	MBASED_1.14.0.tar.gz
Windows Binary	MBASED_1.14.0.zip
Mac OS X 10.11 (El Capitan)	MBASED_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MBASED
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MBASED
Package Short Url	//www.andersvercelli.com/packages/MBASED/
Package Downloads Report	Download Stats