iranges

doi:10.18129/b9.bioc.iranges

该包适用于生物导体的3.8版;对于稳定的最新版本,请参阅iranges

用于操纵序列间隔的基础架构

生物导体版本:3.8

提供有效的低水平和高度可重复使用的S4类,用于在整数的注释范围内存储,操纵和聚合。实现范围操作的代数,包括用于查找重叠和最近邻居的有效算法。定义有效的类似于列表的类,用于存储,转换和汇总大型分组数据,即原子向量和数据范围的集合。

作者:H。Pagès,P。Aboyoun和M. Lawrence

维护者:bioconductor.org>的生物导体套件维护器<维护器>

引用(从r内,输入引用(“ iranges”)):

安装

要安装此软件包,请启动R(版本“ 3.5”)并输入:

if(!sireseenamespace(“ biocmanager”,悄悄= true))install.packages(“ biocmanager”)biocmanager :: install(“ iranges”)

对于R的较旧版本,请参考适当的生物导体释放

文档

要查看系统中安装此软件包的版本的文档,请启动R并输入:

Browsevignettes(“ iranges”)

PDF R脚本 iranges软件包的概述
PDF 参考手册
文本 消息

细节

生物浏览 datarepresentation,,,,基础设施,,,,软件
版本 2.16.0
在生物导体中 Bioc 2.3(R-2.8)(10。5年)
执照 艺术2.0
要看 r(> = 3.1.0),方法,utils,stats,生物基因(> = 0.25.3),S4VECTORS(> = 0.19.11)
进口 Stats4
链接 S4VECTORS
建议 xvector,,,,基因组机,,,,rsamtools,,,,基因组签名,,,,GenomicFeatures,,,,bsgenome.celegans.ucsc.ce2,,,,pasillabamsubset,,,,运行,,,,生物使用
系统要求
增强
URL
取决于我 AnnotationDbi,,,,AnnotationHubdata,,,,Baalchip,,,,BayEspeak,,,,Biomvrcns,,,,生物弦,,,,Biseq,,,,BSGENOME,,,,气泡,,,,Bumphunter,,,,咖啡店,,,,卡斯珀,,,,cexor,,,,Chimeraviz,,,,芯片,,,,Chippeakanno,,,,chipseq,,,,chrogps,,,,cnpbayes,,,,法典,,,,共识,,,,CSAR,,,,CustomProdb,,,,Deepsnv,,,,延迟,,,,deseq2,,,,dexseq,,,,dirichletmultinomial,,,,dmchmm,,,,DMRCALLER,,,,Epgenomix,,,,DEBLUSTER,,,,外观复制,,,,FCCAC,,,,funcisnp.data,,,,代理商,,,,GenomeInfodB,,,,基因组签名,,,,GenomicFeatures,,,,基因组机,,,,Genominator,,,,grohmm,,,,Gtrellis,,,,吉他,,,,GVIZ,,,,港口,,,,Helloranges,,,,HITC,,,,hmmcopy,,,,htseqtools,,,,IDEOVIZ,,,,intad,,,,Liebermanaidenhic2009,,,,甲基分析,,,,主题,,,,主题,,,,NADFINDER,,,,ORFIK,,,,耳管酶,,,,pd.ag,,,,pd.aragene.1.0.st,,,,pd.aragene.1.1.st,,,,PD.ATH1.121501,,,,pd.barley1,,,,pd.bovgene.1.0.st,,,,pd.bovgene.1.1.st,,,,pd.bovine,,,,pd.bsubtilis,,,,pd.cangene.1.0.st,,,,pd.cangene.1.1.st,,,,pd,,,,pd.canine.2,,,,pd.celegans,,,,pd.Chicken,,,,pd.Chigene.1.0.st,,,,pd.Chigene.1.1.st,,,,pd.Chogene.2.0.st,,,,pd.Chogene.2.1.st,,,,pd.Citrus,,,,pd.clariom.d.human,,,,pd.clariom.s.s.human,,,,pd.clariom.s.human.ht,,,,PD.Clariom.S.Mouse,,,,pd.clariom.s.mouse.ht,,,,pd.clariom.s.rat,,,,pd.clariom.s.rat.ht,,,,PD.Cotton,,,,pd.Cyngene.1.0.St,,,,pd.Cyngene.1.1.st,,,,pd.cyrgene.1.0.st,,,,pd.cyrgene.1.1.st,,,,pd.cytegenetics.array,,,,pd.drogene.1.0.st,,,,pd.drogene.1.1.st,,,,pd.Drosgenome1,,,,PD.Drosophila.2,,,,PD.E.COLI.2,,,,pd.ecoli,,,,pd.ecoli.asv2,,,,pd.elegene.1.0.st,,,,pd.elegene.1.1.st,,,,pd.Equgene.1.0.st,,,,pd.Equgene.1.1.st,,,,pd.felgene.1.0.st,,,,pd.felgene.1.1.st,,,,pd.fingene.1.0.st,,,,pd.fingene.1.1.st,,,,pd.Genomewidenp.5,,,,pd.Genomewidenp.6,,,,pd.guigene.1.0.st,,,,pd.Guigene.1.1.st,,,,PD.HC.G110,,,,pd.hg.Focus,,,,pd.hg.u133.plus.2,,,,pd.hg.u133a,,,,pd.hg.u133a.2,,,,pd.hg.u133a.tag,,,,pd.hg.u133b,,,,pd.hg.u219,,,,pd.hg.u95a,,,,pd.hg.u95av2,,,,pd.hg.u95b,,,,pd.hg.u95c,,,,pd.hg.u95d,,,,pd.hg.u95e,,,,pd.hg18.60mer.expr,,,,pd.ht.hg.u133.plus.pm,,,,pd.ht.hg.u133a,,,,pd.ht.mg.430a,,,,pd.hta.2.0,,,,pd.hu6800,,,,pd.huex.1.0.st.v2,,,,pd.hugene.1.0.st.v1,,,,pd.hugene.1.1.st.v1,,,,pd.hugene.2.0.st,,,,pd.hugene.2.1.st,,,,pd.maize,,,,pd.mapping250k.nsp,,,,pd.mapping250k.Sty,,,,pd.mapping50k.hind240,,,,pd.mapping50k.xba240,,,,pd.margene.1.0.st,,,,pd.margene.1.1.st,,,,pd.medgene.1.0.st,,,,pd.Medgene.1.1.st,,,,pd.Medicago,,,,pd.mg.u74a,,,,pd.mg.u74av2,,,,pd.mg.u74b,,,,pd.mg.u74bv2,,,,pd.mg.u74c,,,,pd.mg.u74cv2,,,,pd.mirna.1.0,,,,pd.mirna.2.0,,,,pd.mirna.3.0,,,,pd.mirna.4.0,,,,pd.moe430a,,,,pd.moe430b,,,,pd.moex.1.0.st.v1,,,,pd.mogene.1.0.st.v1,,,,pd.mogene.1.1.st.v1,,,,pd.mogene.2.0.st,,,,pd.mogene.2.1.st,,,,PD.Mouse430.2,,,,PD.Mouse430a.2,,,,pd.mta.1.0,,,,pd.mu11ksuba,,,,pd.mu11ksubb,,,,pd.nugo.hs1a520180,,,,pd.nugo.mm1a520177,,,,pd.ovigene.1.0.st,,,,pd.ovigene.1.1.st,,,,pd.pae.g1a,,,,pd.plasmodium.anopheles,,,,PD.Poplar,,,,pd.porcine,,,,pd.porgene.1.0.st,,,,pd.porgene.1.1.st,,,,pd.rabgene.1.0.st,,,,pd.rabgene.1.1.st,,,,PD.RAE230A,,,,PD.RAE230b,,,,pd.raex.1.0.st.v1,,,,pd.ragene.1.0.st.v1,,,,pd.ragene.1.1.st.v1,,,,pd.ragene.2.0.st,,,,pd.ragene.2.1.st,,,,PD.RAT230.2,,,,pd.rcngene.1.0.st,,,,pd.rcngene.1.1.st,,,,pd.rg.u34a,,,,pd.rg.u34b,,,,pd.rg.u34c,,,,pd.rhegene.1.0.st,,,,pd.rhegene.1.1.st,,,,pd.RESUS,,,,pd.rice,,,,pd.rjpgene.1.0.st,,,,pd.rjpgene.1.1.st,,,,PD.RN.U34,,,,pd.rta.1.0,,,,pd.rusgene.1.0.st,,,,pd.rusgene.1.1.st,,,,pd.s.aureus,,,,pd.soybean,,,,pd.soygene.1.0.st,,,,pd.soygene.1.1.st,,,,pd.sugar.cane,,,,pd.tomato,,,,pd.u133.x3p,,,,pd.Vinifera,,,,pd.wheat,,,,pd.x.laevis.2,,,,pd.x.tropicalis,,,,pd.xenopus.laevis,,,,pd.yeast.2,,,,pd.yg.s98,,,,pd.zebgene.1.0.st,,,,pd.zebgene.1.1.st,,,,pd.zebrafish,,,,pepstat,,,,PGA,,,,ping,,,,plyranges,,,,probamr,,,,诗篇,,,,refnet,,,,rfpred,,,,rgadem,,,,rgreat,,,,Ripseeker,,,,RJMCMCN核小体,,,,rmat,,,,比例4C,,,,SCSR,,,,sgseq,,,,Sictools,,,,snplocs.hsapiens.dbsnp.20101109,,,,snplocs.hsapiens.dbsnp.20120608,,,,snplocs.hsapiens.dbsnp141.grch38,,,,snplocs.hsapiens.dbsnp142.grch37,,,,teqc,,,,Traser,,,,三形,,,,三元,,,,变体工具,,,,xtrasnplocs.hsapiens.dbsnp141.grch38,,,,xvector
进口我 ALDEX2,,,,等位基因平衡,,,,高山,,,,扩增器,,,,Aneufinder,,,,Annmap,,,,Annotatr,,,,感谢,,,,arrayexpresshts,,,,arraytv,,,,阿斯普利,,,,评估员,,,,atacseqqc,,,,舞会礼服,,,,bamsignals,,,,BasicStarrseq,,,,BayEspeak,,,,BBCANALYZER,,,,Beadarray,,,,Bioconcotk,,,,Biovizbase,,,,Biseq,,,,bitseq,,,,BNBC,,,,bprmeth,,,,分支机构,,,,Breakpointr,,,,BSGENOME,,,,BSSEQ,,,,bumhmm,,,,Cagefightr,,,,卡格,,,,CGDV17,,,,收费,,,,魅力,,,,时尚,,,,chipanalyser,,,,Chipenrich,,,,chipenrich.data,,,,chipexoqual,,,,chipqc,,,,Chipseeker,,,,chipseq,,,,chipseqr,,,,chipseqspike,,,,芯片,,,,ChromheatMap,,,,Chromstar,,,,Chromswitch,,,,Chromvar,,,,西塞罗,,,,Cindex,,,,切肉刀,,,,CN. -ops,,,,CNER,,,,cnvpanelizer,,,,CNVRD2,,,,Cobindr,,,,可可,,,,彗星,,,,Compepitools,,,,contibait,,,,Conumee,,,,库务,,,,copywriter,,,,CoverageView,,,,CRISPRSEEK,,,,crisprvariants,,,,CSAW,,,,Dada2,,,,碎片器,,,,解码,,,,延迟的matrixstats,,,,德芬德,,,,derfinderhelper,,,,derfinderplot,,,,DESCAN2,,,,差异,,,,Diffhic,,,,diffloop,,,,dmrcate,,,,DMRSCAN,,,,DMRSEQ,,,,多米诺骨牌效应,,,,doqtl,,,,Drimseq,,,,EasyRnaseq,,,,EDASEQ,,,,埃尔默,,,,富集图,,,,Ensembldb,,,,epivizr,,,,epivizrdata,,,,Erma,,,,esatac,,,,EventPointer,,,,面部,,,,FastQCleaner,,,,fastseg,,,,Findmyfriends,,,,FitCons.UCSC.HG19,,,,拖鞋,,,,flowq,,,,funcisnp,,,,ga4ghclient,,,,GCAPC,,,,GenBankr,,,,基因贡献,,,,Genegeneinter,,,,创世纪,,,,GenStructurotootools,,,,Genogam,,,,基因组化,,,,基因组合,,,,基因组签名,,,,GenomicDataCommons,,,,Genomicfiles,,,,基因组间,,,,GenomicsCores,,,,基因组菌,,,,Genoset,,,,Genotypeeval,,,,Genvisr,,,,GGBASE,,,,GGBIO,,,,ggtools,,,,girafe,,,,GMAPR,,,,Gofuncr,,,,GoogleGenomics,,,,Gopro,,,,哥特,,,,GPART,,,,gqtlstats,,,,Guideseq,,,,Gwascat,,,,H5VC,,,,HDF5Array,,,,热图,,,,打ic,,,,Hiccompare,,,,Hilbertcurve,,,,htseqgenie,,,,冰茶,,,,理想的,,,,IMAS,,,,inpas,,,,检查,,,,Intansv,,,,互动集,,,,兴趣,,,,Interminer,,,,IPDDB,,,,同工型间分析仪,,,,Isomirs,,,,IVAS,,,,iWtomics,,,,接口,,,,核粒子,,,,萝拉,,,,M3D,,,,Macpet,,,,Madseq,,,,mafdb.1kgenomes.phase1.grch38,,,,mafdb.1kgenomes.phase1.hs37d5,,,,mafdb.1kgenomes.phase3.grch38,,,,mafdb.1kgenomes.phase3.hs37d5,,,,mafdb.esp6500si.v2.ssa137.grch38,,,,mafdb.esp6500si.v2.ssa137.hs37d5,,,,mafdb.exac.r1.0.grch38,,,,mafdb.exac.r1.0.hs37d5,,,,mafdb.exac.r1.0.nontcga.grch38,,,,mafdb.exac.r1.0.nontcga.hs37d5,,,,mafdb.gnomad.r2.0.1.grch38,,,,mafdb.gnomad.r2.0.1.hs37d5,,,,mafdb.gnomad.r2.1.hs37d5,,,,mafdb.gnomadex.r2.0.1.grch38,,,,mafdb.gnomadex.r2.0.1.hs37d5,,,,mafdb.gnomadex.r2.1.hs37d5,,,,mafdb.topmed.freeze5.hg19,,,,mafdb.topmed.freeze5.hg38,,,,马瑟,,,,母子,,,,MCSEA,,,,MDTS,,,,一顿饭,,,,Medips,,,,metagene,,,,甲基,,,,甲基赫里西氏菌,,,,甲基类,,,,甲基分析,,,,甲基硫酸,,,,甲基库,,,,甲基管,,,,甲基赛克,,,,甲基菌,,,,methyvim,,,,Minfi,,,,最小值,,,,米拉,,,,马赛克,,,,Motifbreakr,,,,MotifMatchr,,,,主题,,,,动机,,,,MSA,,,,MSGBSR,,,,MSNBase,,,,mtseeker,,,,mtseekerdata,,,,多亚sayExexperiment,,,,多胎,,,,突变模式,,,,狭窄,,,,NORMR,,,,核素,,,,,,,,寡群,,,,omadb,,,,OMICSPCA,,,,OpenPrimer,,,,有机体,,,,有机体,,,,校长,,,,panelcn.mops,,,,PBase,,,,PCAEXPLORER,,,,pd.081229.hg18.promoter.medip.hx1,,,,PD.2006.07.18.hg18.refseq.promoter,,,,PD.2006.07.18.mm8.refseq.promoter,,,,PD.2006.10.31.RN34.REFSEQ.PROMOTER,,,,pd.atdschip.tiling,,,,pd.charm.hg18.example,,,,pd.feinberg.hg18.me.hx1,,,,pd.feinberg.mm8.me.hx1,,,,pd.mirna.3.1,,,,pdinfobuilder,,,,phastcons100way.ucsc.hg19,,,,phastcons100way.ucsc.hg38,,,,phastcons7way.ucsc.hg38,,,,图片,,,,ping,,,,苍白,,,,podkat,,,,聚酯纤维,,,,PQSFINDER,,,,Prebs,,,,Primirtss,,,,属属,,,,PVIZ,,,,QDNASEQ,,,,qpgraph,,,,QPLEXANALYZER,,,,QSEA,,,,,,,,R3CPET,,,,R3CSEQ,,,,R453plus1toolbox,,,,破烂的经历,,,,Rarevariantvis,,,,稀有,,,,rcade,,,,RCGH,,,,叙事,,,,redseq,,,,区域人,,,,REMP,,,,repitools,,,,报告工具,,,,rgadem,,,,肋骨蛋白,,,,riboseqr,,,,rmat,,,,rnaprobr,,,,RNASEQMAP,,,,rnbeads,,,,怒吼,,,,RQC,,,,rsamtools,,,,rsffreader,,,,RSVSIM,,,,rtcgatoolbox,,,,RTN,,,,rtracklayer,,,,扫描,,,,片段,,,,Seqarray,,,,seqcat,,,,seqpattern,,,,seqplots,,,,seqsetvis,,,,seqsqc,,,,Seqvartools,,,,芝麻,,,,塞文,,,,Shortread,,,,Smite,,,,Snpchip,,,,Snphood,,,,snplocs.hsapiens.dbsnp.20101109,,,,snplocs.hsapiens.dbsnp.20120608,,,,snplocs.hsapiens.dbsnp141.grch38,,,,snplocs.hsapiens.dbsnp142.grch37,,,,snplocs.hsapiens.dbsnp144.grch37,,,,snplocs.hsapiens.dbsnp144.grch38,,,,snplocs.hsapiens.dbsnp149.grch38,,,,snplocs.hsapiens.dbsnp150.grch38,,,,snplocs.hsapiens.dbsnp151.grch38,,,,soggi,,,,somaticccanceralterations,,,,躯体签名,,,,稀疏,,,,剪接物,,,,剪接图,,,,碎片,,,,Srnadiff,,,,斯坦,,,,Strandcheckr,,,,总结性特征,,,,SVM2CRM,,,,tarseqqc,,,,tcgabiolinks,,,,tcgautils,,,,TCSEQ,,,,TFBSTOOLS,,,,tfea.chip,,,,TFHAZ,,,,Titancna,,,,TNT,,,,TrackTables,,,,TrackViewer,,,,transcriptr,,,,transview,,,,三形,,,,tRNA,,,,Trnadbimport,,,,tsrchitect,,,,TSSI,,,,TVTB,,,,txreginfra,,,,独立,,,,香草,,,,变体,,,,变体滤波器,,,,Wavcluster,,,,波动,,,,WigglePlotr,,,,xtrasnplocs.hsapiens.dbsnp141.grch38,,,,xtrasnplocs.hsapiens.dbsnp144.grch37,,,,xtrasnplocs.hsapiens.dbsnp144.grch38,,,,xvector,,,,山药
建议我 注释,,,,AnnotationHub,,,,BASESPACER,,,,生物基因,,,,芝加哥,,,,分类,,,,epivizrchart,,,,glimma,,,,GQTLBASE,,,,Gwastools,,,,希尔伯特维斯,,,,Hilbertvisgui,,,,马提尼,,,,幻影,,,,地区报告,,,,RTCGA,,,,S4VECTORS,,,,tfutils,,,,yeastrnaseq
链接到我 生物弦,,,,CNER,,,,解码,,,,基因组签名,,,,基因组机,,,,烤肉串,,,,母子,,,,rsamtools,,,,rsffreader,,,,rtracklayer,,,,Shortread,,,,三元,,,,变体,,,,变体滤波器,,,,xvector
构建报告

包装档案

跟随2021年欧洲杯比分预测 在R会话中使用此软件包的说明。

源包 iranges_2.16.0.tar.gz
Windows二进制 iranges_2.16.0.zip(32-和64位)
Mac OS X 10.11(El Capitan) iranges_2.16.0.tgz
源存储库 git克隆https://git.bioconductor.org/packages/iranges
源存储库(开发人员访问) git clone git@git.bioconductor.org:包装/iranges
包装短URL //www.andersvercelli.com/packages/iranges/
软件包下载报告 下载统计

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