bacon

DOI:10.18129/B9.bioc.bacon

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, seebacon.

Controlling bias and inflation in association studies using the empirical null distribution

Bioconductor version: 3.8

Bacon can be used to remove inflation and bias often observed in epigenome- and transcriptome-wide association studies. To this end bacon constructs an empirical null distribution using a Gibbs Sampling algorithm by fitting a three-component normal mixture on z-scores.

Author: Maarten van Iterson [aut, cre], Erik van Zwet [ctb]

Maintainer: Maarten van Iterson

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("bacon")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("bacon")

HTML	R Script	Controlling bias and inflation in association studies using the empirical null distribution
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect,Bayesian,GenomeWideAssociation,ImmunoOncology,MethylationArray,MultipleComparison,RNASeq,Regression,Software,StatisticalMethod,Transcriptomics
Version	1.10.1
In Bioconductor since	BioC 3.3 (R-3.3) (3 years)
License	GPL (>= 2)
Depends	R (>= 3.3), methods, stats,ggplot2, graphics,BiocParallel,ellipse
Imports
LinkingTo
Suggests	BiocStyle,knitr,rmarkdown,testthat,roxygen2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	bacon_1.10.1.tar.gz
Windows Binary	bacon_1.10.1.zip(32- & 64-bit)
Mac OS X 10.11 (El Capitan)	bacon_1.10.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bacon
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bacon
Package Short Url	//www.andersvercelli.com/packages/bacon/
Package Downloads Report	Download Stats