chipseq

DOI:10.18129/B9.bioc.chipseq

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, seechipseq.

chipseq: A package for analyzing chipseq data

Bioconductor version: 3.8

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("chipseq")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("chipseq")

PDF	R Script	A Sample ChIP-Seq analysis workflow
PDF		Reference Manual

Details

biocViews	ChIPSeq,Coverage,DataImport,QualityControl,Sequencing,Software
Version	1.32.0
In Bioconductor since	BioC 2.5 (R-2.10) (9.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods,BiocGenerics(>= 0.1.0),S4Vectors(>= 0.17.25),IRanges(>= 2.13.12),GenomicRanges(>= 1.31.8),ShortRead
Imports	methods, stats,lattice,BiocGenerics,IRanges,GenomicRanges,ShortRead
LinkingTo
Suggests	BSgenome,GenomicFeatures,TxDb.Mmusculus.UCSC.mm9.knownGene
SystemRequirements
Enhances
URL
Depends On Me	PING
Imports Me	ChIPQC,CopywriteR,HTSeqGenie,soGGi,transcriptR
Suggests Me	GenoGAM,ggbio
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	chipseq_1.32.0.tar.gz
Windows Binary	chipseq_1.32.0.zip(32- & 64-bit)
Mac OS X 10.11 (El Capitan)	chipseq_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chipseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chipseq
Package Short Url	//www.andersvercelli.com/packages/chipseq/
Package Downloads Report	Download Stats