S4Vectors

DOI:10.18129 / B9.bioc.S4Vectors

这个包适用于Bioconductor 3.9版;有关稳定的最新发布版本,请参见S4Vectors

生物导体中矢量和列表容器的基础

Bioconductor版本:3.9

S4Vectors包定义了Vector和List虚拟类以及一组扩展r中普通Vector和列表语义的泛型函数。包开发人员可以轻松地将类Vector或类列表对象实现为Vector或List的具体子类。2021欧洲杯体育投注开户此外,在S4Vectors包本身中实现了一些常见的低级具体子类(例如DataFrame、Rle和Hits)(更多的子类在IRanges包和其他Bioconductor基础设施包中实现)。

作者:H. Pagès, M. Lawrence和P. Aboyoun

维护者:Bioconductor Package维护者< Maintainer at Bioconductor .org>

引文(从R内,输入引用(“S4Vectors”)):

安装

要安装这个包,启动R(版本“3.6”)并输入:

如果(!requireNamespace("BiocManager", quiet = TRUE)) install.packages("BiocManager")::install("S4Vectors")

对于R的旧版本,请参考相应的Bioconductor释放

文档

要查看系统中安装的此包版本的文档,请启动R并输入:

browseVignettes(“S4Vectors”)

PDF R脚本 S4类系统的快速概述
PDF R脚本 S4Vectors包概述
PDF R脚本 Rle提示和技巧
PDF 参考手册
文本 新闻

细节

biocViews DataRepresentation基础设施软件
版本 0.22.1
在Bioconductor BioC 3.0 (R-3.1)(5年)
许可证 艺术- 2.0
取决于 R(>= 3.3.0),方法,utils, stats, stats4,BiocGenerics(> = 0.23.3)
进口
链接
建议 IRangesGenomicRangesSummarizedExperiment矩阵DelayedArrayShortReaddata.tableRUnitBiocStyle
SystemRequirements
增强了
URL
全靠我 altcdfenvsAnnotationHubDataATACseqQCBiostringsBiSeqBSgenomebumphunter红衣主教CellMapperCexoRchimeravizChIPCompChIPpeakAnnochipseqChIPseqRClassifyR食典委coseqCSARDelayedArrayDelayedDataFrameDESeq2DEXSeqDirichletMultinomialDMCHMMDMRcallerepigenomixepiheteQTLExperimentHubDataExpressionAtlasfCCACFlowSorted.Blood.EPICGA4GHclientgeneregulationGenoGAMGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesGenomicScoresGenomicTuplesgirafegroHMMGvizHelloRangeshtSeqToolsInPASInTAD感兴趣IRangesLoomExperimentMotifDbMSnbaseMTseekerNADfinderNBAMSeqOTUbasepd.agpd.aragene.1.0.stpd.aragene.1.1.stpd.ath1.121501pd.barley1pd.bovgene.1.0.stpd.bovgene.1.1.stpd.bovinepd.bsubtilispd.cangene.1.0.stpd.cangene.1.1.stpd.caninepd.canine.2pd.celeganspd.chickenpd.chigene.1.0.stpd.chigene.1.1.stpd.chogene.2.0.stpd.chogene.2.1.stpd.citruspd.clariom.d.humanpd.clariom.s.humanpd.clariom.s.human.htpd.clariom.s.mousepd.clariom.s.mouse.htpd.clariom.s.ratpd.clariom.s.rat.htpd.cottonpd.cyngene.1.0.stpd.cyngene.1.1.stpd.cyrgene.1.0.stpd.cyrgene.1.1.stpd.cytogenetics.arraypd.drogene.1.0.stpd.drogene.1.1.stpd.drosgenome1pd.drosophila.2pd.e.coli.2pd.ecolipd.ecoli.asv2pd.elegene.1.0.stpd.elegene.1.1.stpd.equgene.1.0.stpd.equgene.1.1.stpd.felgene.1.0.stpd.felgene.1.1.stpd.fingene.1.0.stpd.fingene.1.1.stpd.genomewidesnp.5pd.genomewidesnp.6pd.guigene.1.0.stpd.guigene.1.1.stpd.hc.g110pd.hg.focuspd.hg.u133.plus.2pd.hg.u133apd.hg.u133a.2pd.hg.u133a.tagpd.hg.u133bpd.hg.u219pd.hg.u95apd.hg.u95av2pd.hg.u95bpd.hg.u95cpd.hg.u95dpd.hg.u95epd.hg18.60mer.exprpd.ht.hg.u133.plus.pmpd.ht.hg.u133apd.ht.mg.430apd.hta.2.0pd.hu6800pd.huex.1.0.st.v2pd.hugene.1.0.st.v1pd.hugene.1.1.st.v1pd.hugene.2.0.stpd.hugene.2.1.stpd.maizepd.mapping250k.nsppd.mapping250k.stypd.mapping50k.hind240pd.mapping50k.xba240pd.margene.1.0.stpd.margene.1.1.stpd.medgene.1.0.stpd.medgene.1.1.stpd.medicagopd.mg.u74apd.mg.u74av2pd.mg.u74bpd.mg.u74bv2pd.mg.u74cpd.mg.u74cv2pd.mirna.1.0pd.mirna.2.0pd.mirna.3.0pd.mirna.4.0pd.moe430apd.moe430bpd.moex.1.0.st.v1pd.mogene.1.0.st.v1pd.mogene.1.1.st.v1pd.mogene.2.0.stpd.mogene.2.1.stpd.mouse430.2pd.mouse430a.2pd.mta.1.0pd.mu11ksubapd.mu11ksubbpd.nugo.hs1a520180pd.nugo.mm1a520177pd.ovigene.1.0.stpd.ovigene.1.1.stpd.pae.g1apd.plasmodium.anophelespd.poplarpd.porcinepd.porgene.1.0.stpd.porgene.1.1.stpd.rabgene.1.0.stpd.rabgene.1.1.stpd.rae230apd.rae230bpd.raex.1.0.st.v1pd.ragene.1.0.st.v1pd.ragene.1.1.st.v1pd.ragene.2.0.stpd.ragene.2.1.stpd.rat230.2pd.rcngene.1.0.stpd.rcngene.1.1.stpd.rg.u34apd.rg.u34bpd.rg.u34cpd.rhegene.1.0.stpd.rhegene.1.1.stpd.rhesuspd.ricepd.rjpgene.1.0.stpd.rjpgene.1.1.stpd.rn.u34pd.rta.1.0pd.rusgene.1.0.stpd.rusgene.1.1.stpd.s.aureuspd.soybeanpd.soygene.1.0.stpd.soygene.1.1.stpd.sugar.canepd.tomatopd.u133.x3ppd.vitis.viniferapd.wheatpd.x.laevis.2pd.x.tropicalispd.xenopus.laevispd.yeast.2pd.yg.s98pd.zebgene.1.0.stpd.zebgene.1.1.stpd.zebrafishplethyRcwlRepVizRIPSeekerRnBeadssegmentSeqSNPlocs.Hsapiens.dbSNP141.GRCh38StructstringsSummarizedBenchmarkTimeSeriesExperimenttopdownrTreeSummarizedExperiment三层VariantTools火神XtraSNPlocs.Hsapiens.dbSNP141.GRCh38XVector
进口我 affycoretoolsALDEx2AllelicImbalance高山amplicananamiRAneuFinder微生物AnnotationDbiAnnotationForgeAnnotationHubannotatrappreci8RArrayTVASpliBadRegionFinder舞会礼服基础知识BasicSTARRseq后面;BiocNeighborsBiocOncoTKBiocSingularbiotmlebiovizBaseBiSeqBitSeqbnbcBPRMeth分歧点breakpointRBSgenomebsseqCAGEfightR篮球选手卡斯珀催化剂ccfindRcelarefceldacgdv17印度豹别致的ChIPanalyserchipenrichchipenrich.dataChIPexoQualChIPQCChIPseekerchipseqDBDataChIPSeqSpikechromstaRchromswitchchromVAR西塞罗CINdex切肉刀CluMSIDclusterExperimentcn.mopscnCNPBayesCNVPanelizerCNVRanger可可CoGAPS彗星compEpiToolsconsensusDEconsensusSeekeRcontiBAITcopynumber文案CoverageViewCRISPRseekCrispRVariantscsawCTDquerier腰带curatedMetagenomicDatacuratedTCGADatacustomProDBcydarDChIPRepdebrowser解读decompTumor2Sig反编排DEGreportDelayedMatrixStatsderfinderderfinderHelperderfinderPlotDEScan2DiffBinddiffcytdiffHicdiffloopDiscoRhythmDMRcatedmrseq剂量定量给料器DRIMSeqDropletUtilseasyRNASeqeegc埃尔默ENmixEnrichmentBrowserenrichTFensembldbensemblVEPepivizrepivizrDataepivizrStandaloneermaesATACEventPointerExperimentHubFastqCleanerfastsegFindMyFriends鱼池fitCons.UCSC.hg19FunciSNPGA4GHshinygcapcGDSArraygenbankrgenefilterGeneRegionScan《创世纪》GeneStructureToolsgenomationgenomeIntervalsGenomicAlignmentsGenomicDataCommonsGenomicFilesGenomicInteractionsgenosetGGBaseggbioGGtoolsGlimmagmapR还装有哥特gQTLBasegQTLstatsGRmetricsGSEABenchmarkeRGUIDEseqgwascath5vcHCABrowserHDF5ArrayHiCBricksHiCcomparehipathiahmdbQueryHMP16SDataHTSeqGenieHumanTranscriptomeCompendiumicetea理想的imaImpulseDE2检查InteractionSetInterMineRiSEEisomiRsivaivygapSEIWTomicsJunctionSeqkaryoploteR烤肉串lipidrloci2path萝拉M3DMACPETMADSEQMafDb.1Kgenomes.phase1.GRCh38MafDb.1Kgenomes.phase1.hs37d5MafDb.1Kgenomes.phase3.GRCh38MafDb.1Kgenomes.phase3.hs37d5MafDb.ESP6500SI.V2.SSA137.GRCh38MafDb.ESP6500SI.V2.SSA137.hs37d5MafDb.ExAC.r1.0.GRCh38MafDb.ExAC.r1.0.hs37d5MafDb.ExAC.r1.0.nonTCGA.GRCh38MafDb.ExAC.r1.0.nonTCGA.hs37d5MafDb.gnomAD.r2.0.1.GRCh38MafDb.gnomAD.r2.1.GRCh38MafDb.gnomAD.r2.1.hs37d5MafDb.gnomADex.r2.0.1.GRCh38MafDb.gnomADex.r2.1.GRCh38MafDb.gnomADex.r2.1.hs37d5MafDb.TOPMed.freeze5.hg19MafDb.TOPMed.freeze5.hg38马提尼桅杆mCSEAmeshrmetagenomeFeaturesmethInheritSimmethylInheritancemethylKitmethylPipemethylumimethyvimmimagerminfiMinimumDistance米拉海市蜃楼missRowsMMDiff2Modstrings马赛克motifbreakRmotifmatchrMotIVmpramsamsgbsRMultiAssayExperimentMultiDataSetMutationalPatternsmygenemyvariantNarrowPeaksnucleoSim诊断oligoClassesontoProcopenPrimeRORFikOrganism.dplyrOrganismDbi先驱者PAIRADISEpanelcn.mopsPathwaySplicePbasepcaExplorerpd.atdschip.tilingpdInfoBuilderPGAphastCons100way.UCSC.hg19phastCons100way.UCSC.hg38phastCons7way.UCSC.hg38phemd图片plyrangespogo聚酯PowerExplorerpqsfinder婴儿车prebsPrecisionTrialDrawerprimirTSSprocoilprofileplyrPureCNqcmetricsqpgraphQuasRR3CPETR453Plus1ToolboxRaggedExperimentRareVariantVisRariantRcade美国广播公司重新计票地区regionReportregspliceREMPRepitoolsrestfulSErexposomeRGMQLrhdf5clientRiboProfilingRJMCMCNucleosomesRMassBankRmmquantRNAprobR咆哮RqcRsamtoolsrScudoRTCGAToolbox研制rtracklayerSC3scDDscdsscmapscMergeSCnormscPipe食物颈背scTensorSeqArrayseqCATseqplotsseqsetvisSeqSQCSeqVarTools芝麻sevenbridgessevenCSGSeqShortReadSingleCellExperimentsingleCellTKsingscoreskewr击杀SNPchipSNPhoodSNPlocs.Hsapiens.dbSNP.20101109SNPlocs.Hsapiens.dbSNP141.GRCh38SNPlocs.Hsapiens.dbSNP144.GRCh37SNPlocs.Hsapiens.dbSNP144.GRCh38SNPlocs.Hsapiens.dbSNP149.GRCh38SNPlocs.Hsapiens.dbSNP150.GRCh38SNPlocs.Hsapiens.dbSNP151.GRCh38soGGiSomaticCancerAlterationsSomaticSignaturesSplicingGraphs分裂sRACIPEsrnadiff斯坦strandCheckRSummarizedExperimentTarSeqQCTCGAbiolinksTCGAutilsTFBSToolsTFHAZ三硝基甲苯trackViewertranscriptRTransView时尚的tRNAtRNAdbImporttRNAscanImportTSRchitectTSSiTVTBtwoddpcrtximetaTxRegInfraUlarcircuniversalmotifVanillaICEVariantAnnotationVariantFilteringVCFArraywavClusteRwiggleplotrxcmsXtraSNPlocs.Hsapiens.dbSNP141.GRCh38XtraSNPlocs.Hsapiens.dbSNP144.GRCh37XtraSNPlocs.Hsapiens.dbSNP144.GRCh38XVector山药
建议我 alternativeSplicingEvents.hg19alternativeSplicingEvents.hg38BiocGenericscuratedAdipoChIPcuratedAdipoRNAepivizrChartglobalSeqGWASToolsRTCGA飞溅StructuralVariantAnnotationTFEA。芯片TFutils
链接到我 Biostringscn解读DelayedArrayGenomicAlignmentsGenomicRangesHDF5ArrayIRanges烤肉串MatrixRiderRsamtoolsrSFFreaderrtracklayerShortReadStructstrings三层VariantAnnotationVariantFilteringXVector
构建报告

包档案

遵循2021年欧洲杯比分预测 在R会话中使用此包的说明。

源包 S4Vectors_0.22.1.tar.gz
Windows二进制 S4Vectors_0.22.1.zip
Mac OS X 10.11 (El Capitan) S4Vectors_0.22.1.tgz
源库 git克隆https://git.bioconductor.org/packages/S4Vectors
源存储库(开发人员访问) git克隆git@git.bioconductor.org:packages/S4Vectors
包短Url //www.andersvercelli.com/packages/S4Vectors/
软件包下载报告 下载数据

文档»

Bioconductor

R/凹口包和文档

支持»

请细阅发布指南.将有关Bioconductor的问题发送到以下位置之一: