biobroom

DOI:10.18129/B9.bioc.biobroom

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, seebiobroom.

Turn Bioconductor objects into tidy data frames

Bioconductor version: 3.9

This package contains methods for converting standard objects constructed by bioinformatics packages, especially those in Bioconductor, and converting them to tidy data. It thus serves as a complement to the broom package, and follows the same the tidy, augment, glance division of tidying methods. Tidying data makes it easy to recombine, reshape and visualize bioinformatics analyses.

Author: Andrew J. Bass, David G. Robinson, Steve Lianoglou, Emily Nelson, John D. Storey, with contributions from Laurent Gatto

Maintainer: John D. Storey and Andrew J. Bass

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("biobroom")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("biobroom")

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport,DifferentialExpression,GeneExpression,MultipleComparison,Proteomics,Regression,Software
Version	1.16.0
In Bioconductor since	BioC 3.2 (R-3.2) (4 years)
License	LGPL
Depends	R (>= 3.0.0),broom
Imports	dplyr,tidyr,Biobase
LinkingTo
Suggests	limma,DESeq2,airway,ggplot2,plyr,GenomicRanges,testthat,magrittr,edgeR,qvalue,knitr,data.table,MSnbase,SummarizedExperiment
SystemRequirements
Enhances
URL	https://github.com/StoreyLab/biobroom
BugReports	https://github.com/StoreyLab/biobroom/issues
Depends On Me
Imports Me	TPP
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	biobroom_1.16.0.tar.gz
Windows Binary	biobroom_1.16.0.zip
Mac OS X 10.11 (El Capitan)	biobroom_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biobroom
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biobroom
Package Short Url	//www.andersvercelli.com/packages/biobroom/
Package Downloads Report	Download Stats