BSgenome.Hsapiens.UCSC.hg19

DOI:10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg19

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, seeBSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19)

Bioconductor version: 3.9

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData,BSgenome,Genetics,Homo_sapiens
Version	1.4.0
License	Artistic-2.0
Depends	BSgenome(>= 1.33.5)
Imports	BSgenome
LinkingTo
Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me	annotation,BSgenome.Hsapiens.UCSC.hg19.masked,chimera,CODEX,motifRG,sequencing,traseR,variants
Imports Me	appreci8R,BSgenome.Hsapiens.UCSC.hg19.masked,ChIPComp,decompTumor2Sig,MADSEQ,RareVariantVis,RCAS,TCGAWorkflow,trena
Suggests Me	AneuFinder,ArrayTV,ATACseqQC,BadRegionFinder,Basic4Cseq,BBCAnalyzer,biovizBase,ChIPpeakAnno,chromVAR,CNEr,CRISPRseek,customProDB,DNAshapeR,esATAC,FDb.FANTOM4.promoters.hg19,FDb.UCSC.snp135common.hg19,FDb.UCSC.snp137common.hg19,gcapc,GenomicAlignments,GenomicFeatures,GenomicRanges,GenomicScores,GenVisR,ggbio,gmapR,GUIDEseq,Gviz,h5vc,InPAS,IntEREst,IsoformSwitchAnalyzeR,karyoploteR,MEDIPS,MinimumDistance,MiRaGE,motifbreakR,motifmatchr,MutationalPatterns,ORFik,OrganismDbi,PGA,plyranges,qsea,R453Plus1Toolbox,Rariant,REMP,rGADEM,RiboProfiling,Rsamtools,RSVSim,rtracklayer,SGSeq,signeR,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,StructuralVariantAnnotation,VariantAnnotation,wavClusteR,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,YAPSA
Links To Me

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Source Package	BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	//www.andersvercelli.com/packages/BSgenome.Hsapiens.UCSC.hg19/
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