生物弦

doi:10.18129/b9.bioc.biostrings

有效地操纵生物弦

生物导体版本:版本(3.13)

内存有效的字符串容器,匹配算法和其他实用程序的字符串容器,用于快速操纵大型生物序列或一组序列。

作者:H。Pagès,P。Aboyoun,R。Gentleman和S. Debroy

维护者:h.pagès

引用(从r内,输入引用(“生物弦”)):

安装

要安装此软件包,请启动R(版本“ 4.1”)并输入:

if(!sireseenamespace(“ biocmanager”,悄悄= true))install.packages(“ biocmanager”)biocmanager :: install(“ bioStrings”)

对于R的较旧版本,请参考适当的生物导体释放

文档

要查看系统中安装此软件包的版本的文档,请启动R并输入:

Browsevignettes(“生物弦”)

PDF R脚本 对生物弦中定义的基本类别的简短介绍2
PDF 生物弦快速概述
PDF R脚本 处理探针序列信息
PDF R脚本 多个对齐
PDF R脚本 成对序列比对
PDF 参考手册
文本 消息

细节

生物浏览 结盟,,,,DataImport,,,,datarepresentation,,,,遗传学,,,,基础设施,,,,测序,,,,测序,,,,软件
版本 2.60.0
在生物导体中 Bioc 1.6(R-2.1)或更早(> 16年)
执照 艺术2.0
要看 R(> = 4.0.0),方法,生物基因(> = 0.37.0),S4VECTORS(> = 0.27.12),iranges(> = 2.23.9),xvector(> = 0.29.2),GenomeInfodB
进口 方法,UTILS,GRDEVICES,图形,统计信息,蜡笔
链接 S4VECTORS,,,,iranges,,,,xvector
建议 BSGENOME(> = 1.13.14),bsgenome.celegans.ucsc.ce2(> = 1.3.11),bsgenome.dmelanogaster.ucsc.dm3(> = 1.3.11),bsgenome.hsapiens.ucsc.hg18,,,,果蝇2企业,,,,HGU95AV2Probe,,,,HGU133PROBE,,,,GenomicFeatures(> = 1.3.14),HGU95AV2CDF,,,,副词(> = 1.41.3),Affydata(> = 1.11.5),运行
系统要求
增强 rmpi
URL //www.andersvercelli.com/packages/biostrings
BugReports https://github.com/bioconductor/biostrings/issues
取决于我 altcdfenvs,,,,扩增器,,,,basic4cseq,,,,,,,,BSGENOME,,,,Chimeraviz,,,,chipanalyser,,,,芯片,,,,切肉刀,,,,法典,,,,CRISPRSEEK,,,,解码,,,,Deepsnv,,,,fdb.fantom4.promoters.hg19,,,,Generegionscan,,,,结肠管制,,,,基因组签名,,,,哥特,,,,港口,,,,Helloranges,,,,Hireadsprocessor,,,,IPAC,,,,Jaspar2014,,,,烤肉串,,,,Methtargetedngs,,,,Minfi,,,,modstrings,,,,主题,,,,MSA,,,,肌肉,,,,雏形,,,,奥利戈,,,,Orfhunter,,,,pd.ag,,,,pd.aragene.1.0.st,,,,pd.aragene.1.1.st,,,,PD.ATH1.121501,,,,pd.barley1,,,,pd.bovgene.1.0.st,,,,pd.bovgene.1.1.st,,,,pd.bovine,,,,pd.bsubtilis,,,,pd.cangene.1.0.st,,,,pd.cangene.1.1.st,,,,pd,,,,pd.canine.2,,,,pd.celegans,,,,pd.Chicken,,,,pd.Chigene.1.0.st,,,,pd.Chigene.1.1.st,,,,pd.Chogene.2.0.st,,,,pd.Chogene.2.1.st,,,,pd.Citrus,,,,pd.clariom.d.human,,,,pd.clariom.s.s.human,,,,pd.clariom.s.human.ht,,,,PD.Clariom.S.Mouse,,,,pd.clariom.s.mouse.ht,,,,pd.clariom.s.rat,,,,pd.clariom.s.rat.ht,,,,PD.Cotton,,,,pd.Cyngene.1.0.St,,,,pd.Cyngene.1.1.st,,,,pd.cyrgene.1.0.st,,,,pd.cyrgene.1.1.st,,,,pd.cytegenetics.array,,,,pd.drogene.1.0.st,,,,pd.drogene.1.1.st,,,,pd.Drosgenome1,,,,PD.Drosophila.2,,,,PD.E.COLI.2,,,,pd.ecoli,,,,pd.ecoli.asv2,,,,pd.elegene.1.0.st,,,,pd.elegene.1.1.st,,,,pd.Equgene.1.0.st,,,,pd.Equgene.1.1.st,,,,pd.felgene.1.0.st,,,,pd.felgene.1.1.st,,,,pd.fingene.1.0.st,,,,pd.fingene.1.1.st,,,,pd.Genomewidenp.5,,,,pd.Genomewidenp.6,,,,pd.guigene.1.0.st,,,,pd.Guigene.1.1.st,,,,PD.HC.G110,,,,pd.hg.Focus,,,,pd.hg.u133.plus.2,,,,pd.hg.u133a,,,,pd.hg.u133a.2,,,,pd.hg.u133a.tag,,,,pd.hg.u133b,,,,pd.hg.u219,,,,pd.hg.u95a,,,,pd.hg.u95av2,,,,pd.hg.u95b,,,,pd.hg.u95c,,,,pd.hg.u95d,,,,pd.hg.u95e,,,,pd.hg18.60mer.expr,,,,pd.ht.hg.u133.plus.pm,,,,pd.ht.hg.u133a,,,,pd.ht.mg.430a,,,,pd.hta.2.0,,,,pd.hu6800,,,,pd.huex.1.0.st.v2,,,,pd.hugene.1.0.st.v1,,,,pd.hugene.1.1.st.v1,,,,pd.hugene.2.0.st,,,,pd.hugene.2.1.st,,,,pd.maize,,,,pd.mapping250k.nsp,,,,pd.mapping250k.Sty,,,,pd.mapping50k.hind240,,,,pd.mapping50k.xba240,,,,pd.margene.1.0.st,,,,pd.margene.1.1.st,,,,pd.medgene.1.0.st,,,,pd.Medgene.1.1.st,,,,pd.Medicago,,,,pd.mg.u74a,,,,pd.mg.u74av2,,,,pd.mg.u74b,,,,pd.mg.u74bv2,,,,pd.mg.u74c,,,,pd.mg.u74cv2,,,,pd.mirna.1.0,,,,pd.mirna.2.0,,,,pd.mirna.3.0,,,,pd.mirna.4.0,,,,pd.moe430a,,,,pd.moe430b,,,,pd.moex.1.0.st.v1,,,,pd.mogene.1.0.st.v1,,,,pd.mogene.1.1.st.v1,,,,pd.mogene.2.0.st,,,,pd.mogene.2.1.st,,,,PD.Mouse430.2,,,,PD.Mouse430a.2,,,,pd.mta.1.0,,,,pd.mu11ksuba,,,,pd.mu11ksubb,,,,pd.nugo.hs1a520180,,,,pd.nugo.mm1a520177,,,,pd.ovigene.1.0.st,,,,pd.ovigene.1.1.st,,,,pd.pae.g1a,,,,pd.plasmodium.anopheles,,,,PD.Poplar,,,,pd.porcine,,,,pd.porgene.1.0.st,,,,pd.porgene.1.1.st,,,,pd.rabgene.1.0.st,,,,pd.rabgene.1.1.st,,,,PD.RAE230A,,,,PD.RAE230b,,,,pd.raex.1.0.st.v1,,,,pd.ragene.1.0.st.v1,,,,pd.ragene.1.1.st.v1,,,,pd.ragene.2.0.st,,,,pd.ragene.2.1.st,,,,PD.RAT230.2,,,,pd.rcngene.1.0.st,,,,pd.rcngene.1.1.st,,,,pd.rg.u34a,,,,pd.rg.u34b,,,,pd.rg.u34c,,,,pd.rhegene.1.0.st,,,,pd.rhegene.1.1.st,,,,pd.RESUS,,,,pd.rice,,,,pd.rjpgene.1.0.st,,,,pd.rjpgene.1.1.st,,,,PD.RN.U34,,,,pd.rta.1.0,,,,pd.rusgene.1.0.st,,,,pd.rusgene.1.1.st,,,,pd.s.aureus,,,,pd.soybean,,,,pd.soygene.1.0.st,,,,pd.soygene.1.1.st,,,,pd.sugar.cane,,,,pd.tomato,,,,pd.u133.x3p,,,,pd.Vinifera,,,,pd.wheat,,,,pd.x.laevis.2,,,,pd.x.tropicalis,,,,pd.xenopus.laevis,,,,pd.yeast.2,,,,pd.yg.s98,,,,pd.zebgene.1.0.st,,,,pd.zebgene.1.1.st,,,,pd.zebrafish,,,,周期性,,,,PQSFINDER,,,,pwmenrich,,,,QRQC,,,,QSUTILS,,,,R453plus1toolbox,,,,R4RNA,,,,redseq,,,,rgadem,,,,肋骨蛋白,,,,RRDP,,,,rsamtools,,,,RSVSIM,,,,Sangeranalyser,,,,Sangerseqr,,,,扫描,,,,SELEX,,,,seqbias,,,,测序,,,,Shortread,,,,Sictools,,,,simffpe,,,,SSVIZ,,,,结构线,,,,Systempiper,,,,TopDownr,,,,树木化的特殊性,,,,三元,,,,varcon
进口我 AffyCompatible,,,,等位基因平衡,,,,高山,,,,Aneufinder,,,,AnnotationHubdata,,,,感谢,,,,arrayexpresshts,,,,评估员,,,,atacseqqc,,,,BBCANALYZER,,,,Bcrank,,,,BCSEQ,,,,,,,,BGEECALL,,,,Biovizbase,,,,BrainflowProbes,,,,分支机构,,,,BSGENOME,,,,BSSEQ,,,,bumhmm,,,,Busparse,,,,窖藏,,,,Chippeakanno,,,,chipseqr,,,,芯片,,,,Chromvar,,,,Circrnaprofiler,,,,清理,,,,CNER,,,,cnvfilter,,,,Compepitools,,,,共识,,,,警戒线,,,,crisprvariants,,,,CustomProdb,,,,Dada2,,,,达格洛戈,,,,damefinder,,,,Demptumor2sig,,,,Diffhic,,,,dnashaper,,,,多米诺骨牌效应,,,,EasyRnaseq,,,,EDASEQ,,,,Ensembldb,,,,ememblvep,,,,epitxdb,,,,esatac,,,,Eudysbiome,,,,eupathdb,,,,EventPointer,,,,Exomepeak2,,,,FastQCleaner,,,,FDB.Infinium -Methylation.hg18,,,,FDB.Infinium -Methylation.hg19,,,,Findmyfriends,,,,ga4ghclient,,,,GCAPC,,,,GCRMA,,,,GenBankr,,,,Generegionscan,,,,GenStructurotootools,,,,Genogam,,,,基因组化,,,,基因组签名,,,,基因组分布,,,,GenomicFeatures,,,,GenomicsCores,,,,Genphen,,,,Genvisr,,,,GGBIO,,,,girafe,,,,GMAPR,,,,Gmoviz,,,,Guideseq,,,,GVIZ,,,,Gwascat,,,,H5VC,,,,热图,,,,hicdcplus,,,,希尔达,,,,HITC,,,,htseqgenie,,,,冰茶,,,,idpr,,,,我是男人,,,,inpas,,,,兴趣,,,,Interminer,,,,电离,,,,IPDDB,,,,同工型间分析仪,,,,keggrest,,,,Lowmaca,,,,淋巴索,,,,Macpet,,,,Madseq,,,,母子,,,,MDTS,,,,Medips,,,,Medme,,,,模因,,,,Meskit,,,,元全征,,,,metaseqr2,,,,甲基,,,,甲基管,,,,甲基冰盖,,,,米娅,,,,微生物膜,,,,微生物剂量,,,,microRNA,,,,mmdiff2,,,,Motifbreakr,,,,主题,,,,MotifMatchr,,,,Motifstack,,,,MSNID,,,,MSSTATSPTM,,,,Multicrispr,,,,mungesumstats,,,,Musicatk,,,,突变模式,,,,纳米林区,,,,NGSReports,,,,,,,,寡群,,,,omadb,,,,OpenPrimer,,,,ORFIK,,,,耳管酶,,,,包装,,,,pd.081229.hg18.promoter.medip.hx1,,,,PD.2006.07.18.hg18.refseq.promoter,,,,PD.2006.07.18.mm8.refseq.promoter,,,,PD.2006.10.31.RN34.REFSEQ.PROMOTER,,,,pd.atdschip.tiling,,,,pd.charm.hg18.example,,,,pd.feinberg.hg18.me.hx1,,,,pd.feinberg.mm8.me.hx1,,,,pd.mirna.3.1,,,,pdinfobuilder,,,,甲状腺素,,,,甲状腺素,,,,门索,,,,管框,,,,podkat,,,,聚酯纤维,,,,Primirtss,,,,probamr,,,,Procoil,,,,蛋白质组学杂志,,,,属属,,,,PVIZ,,,,QPLEXANALYZER,,,,QRQC,,,,QSEA,,,,,,,,R3CSEQ,,,,拉姆瓦斯,,,,RCAS,,,,rcpi,,,,补偿,,,,区域人,,,,Regutools,,,,REMP,,,,repitools,,,,rfarm,,,,rgadem,,,,RibosomeProfilingQC,,,,rnamodr,,,,rnaprobr,,,,rnaseqr,,,,RQC,,,,rtracklayer,,,,萨克斯,,,,Scmeth,,,,范围,,,,Scoreinvhap,,,,屏幕,,,,颈背,,,,Seqarray,,,,seqcombo,,,,seqpattern,,,,seqplots,,,,sgseq,,,,签名者,,,,sigspack,,,,Singlemoleculefootprinting,,,,Sitadela,,,,Snphood,,,,soggi,,,,躯体签名,,,,稀疏,,,,碎片,,,,SSCU,,,,结构视频隔离,,,,超级人,,,,突触,,,,Synextend,,,,Synmut,,,,TAPSEQ,,,,tarseqqc,,,,TFBSTOOLS,,,,跨石,,,,特雷娜,,,,tRNA,,,,Trnadbimport,,,,Trnascanimport,,,,TVTB,,,,tximeta,,,,Ularcirc,,,,umi4cats,,,,Universalmotif,,,,变体,,,,variantexperiment,,,,变体滤波器,,,,变体工具,,,,Wavcluster,,,,Xnastring,,,,yapsa
建议我 注释,,,,注释,,,,AnnotationHub,,,,小班夫,,,,土匪,,,,Beadarrayusecases,,,,生物基因,,,,Brgenomics,,,,Cindex,,,,CSAR,,,,艾萨尔,,,,外观复制,,,,Genomicfiles,,,,基因组机,,,,Genoset,,,,Gwastools,,,,maftools,,,,Methrix,,,,甲基菌,,,,幻影,,,,nucpos,,,,rnamodr.alkanilineseq,,,,rpx,,,,RSWEEP,,,,rtrm,,,,snplocs.hsapiens.dbsnp.20101109,,,,snplocs.hsapiens.dbsnp.20120608,,,,snplocs.hsapiens.dbsnp141.grch38,,,,snplocs.hsapiens.dbsnp142.grch37,,,,snplocs.hsapiens.dbsnp144.grch37,,,,snplocs.hsapiens.dbsnp144.grch38,,,,snplocs.hsapiens.dbsnp149.grch38,,,,snplocs.hsapiens.dbsnp150.grch38,,,,snplocs.hsapiens.dbsnp151.grch38,,,,飞溅,,,,SystemPipetools,,,,,,,,xtrasnplocs.hsapiens.dbsnp144.grch37,,,,xtrasnplocs.hsapiens.dbsnp144.grch38,,,,xvector
链接到我 解码,,,,烤肉串,,,,母子,,,,rsamtools,,,,Shortread,,,,三元,,,,变体,,,,变体滤波器
构建报告

包装档案

跟随2021年欧洲杯比分预测 在R会话中使用此软件包的说明。

源包 BioStrings_2.60.0.tar.gz
Windows二进制 BioStrings_2.60.0.zip
MacOS 10.13(高山脉) BioStrings_2.60.0.tgz
源存储库 git克隆https://git.bioconductor.org/packages/biostrings
源存储库(开发人员访问) git clone git@git.bioconductor.org:packages/bioStrings
包装短URL //www.andersvercelli.com/packages/biostrings/
软件包下载报告 下载统计

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