FlowSOM

DOI:10.18129/B9.bioc.FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor version: Release (3.16)

FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.

Author: Sofie Van Gassen [aut, cre], Artuur Couckuyt [aut], Katrien Quintelier [aut], Annelies Emmaneel [aut], Britt Callebaut [aut], Yvan Saeys [aut]

Maintainer: Sofie Van Gassen

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("FlowSOM")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("FlowSOM")

PDF	R Script	FlowSOM
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays,CellBiology,Clustering,FlowCytometry,Software,Visualization
Version	2.6.0
In Bioconductor since	BioC 3.1 (R-3.2) (8 years)
License	GPL (>= 2)
Depends	R (>= 4.0),igraph
Imports	stats, utils,colorRamps,ConsensusClusterPlus,dplyr,flowCore,ggforce,ggnewscale,ggplot2,ggpubr, grDevices,magrittr, methods,rlang,Rtsne,tidyr,BiocGenerics,XML
LinkingTo
Suggests	BiocStyle,testthat,CytoML,flowWorkspace,ggrepel,scattermore,pheatmap,ggpointdensity
SystemRequirements
Enhances
URL	http://www.r-project.orghttp://dambi.ugent.be
Depends On Me
Imports Me	CATALYST,CytoTree,diffcyt,MetaCyto
Suggests Me	HDCytoData
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	FlowSOM_2.6.0.tar.gz
Windows Binary	FlowSOM_2.6.0.zip
macOS Binary (x86_64)	FlowSOM_2.6.0.tgz
macOS Binary (arm64)	FlowSOM_2.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/FlowSOM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/FlowSOM
Bioc Package Browser	https://code.bioconductor.org/browse/FlowSOM/
Package Short Url	//www.andersvercelli.com/packages/FlowSOM/
Package Downloads Report	Download Stats