GenomeInfodB

doi:10.18129/b9.bioc.genomeinfodb

操纵染色体名称的实用程序,包括修改它们以遵循特定的命名样式

生物导体版本:版本(3.15)

包含定义并允许在不同染色体序列命名约定(例如“ Chr1” Vers“ 1”)之间进行翻译的数据和函数,其中包括试图将序列名称放置在其自然而不是词典学顺序中的函数。

作者:Sonali Arora,Martin Morgan,Marc Carlson,H。Pagès

维护者:bioconductor.org>的生物导体套件维护器<维护器>

引用(从r内,输入引用(“ GenomeInfodB”)):

安装

要安装此软件包,请启动R(版本“ 4.2”)并输入:

if(!quired(“ Biocmanager”,悄悄= true))install.packages(“ Biocmanager”)Biocmanager :: install(“ GenomeInfodb”)

对于R的较旧版本,请参考适当的生物导体释放

文档

要查看系统中安装此软件包的版本的文档,请启动R并输入:

Browsevignettes(“ GenomeInfodB”)

PDF R脚本 GenomeInfodB:GenomeInfodB简介
PDF R脚本 GenomeInfodB:将您的生物提交给GenomeInfodB
PDF 参考手册
文本 消息
视频 简单的任务基因组知行

细节

生物浏览 注解,,,,datarepresentation,,,,遗传学,,,,基因数,,,,软件
版本 1.32.2
在生物导体中 Bioc 2.14(R-3.1)(8年)
执照 艺术2.0
要看 R(> = 4.0.0),方法,生物基因(> = 0.37.0),S4VECTORS(> = 0.25.12),iranges(> = 2.13.12)
进口 Stats,Stats4,Utils,rcurl,,,,GenomeInfodBdata
链接
建议 基因组机,,,,rsamtools,,,,基因组签名,,,,GenomicFeatures,,,,txdb.dmelanogaster.ucsc.dm3.ensgene,,,,BSGENOME,,,,BSGENOME.SCEREVISIAE.UCSC.SACCER2,,,,bsgenome.celegans.ucsc.ce2,,,,bsgenome.hsapiens.ncbi.grch38,,,,运行,,,,生物使用,,,,尼特
系统要求
增强
URL //www.andersvercelli.com/packages/genomeinfodb
BugReports https://github.com/bioconductor/genomeinfodb/issues
取决于我 生物弦,,,,Brgenomics,,,,BSGENOME,,,,Bumphunter,,,,芯片,,,,法典,,,,CSAR,,,,基因组签名,,,,GenomicFeatures,,,,基因组机,,,,基因组菌,,,,GMAPR,,,,grohmm,,,,Helloranges,,,,IDEOVIZ,,,,rsamtools,,,,范围,,,,snplocs.hsapiens.dbsnp141.grch38,,,,snplocs.hsapiens.dbsnp142.grch37,,,,UCSCREPETMASKER,,,,变体,,,,xtrasnplocs.hsapiens.dbsnp141.grch38
进口我 等位基因平衡,,,,高山,,,,扩增器,,,,Aneufinder,,,,AnnotationHubdata,,,,Annotatr,,,,Aspediafi,,,,atacseqqc,,,,Atena,,,,Baalchip,,,,舞会礼服,,,,小班夫,,,,BasicStarrseq,,,,Bioplex,,,,Biovizbase,,,,饼干,,,,Biseq,,,,BNBC,,,,分支机构,,,,Breakpointr,,,,BSGENOME,,,,BSSEQ,,,,Busparse,,,,Cagefightr,,,,Cageminer,,,,卡格,,,,卡斯珀,,,,cbioportaldata,,,,cexor,,,,Chimeraviz,,,,chipanalyser,,,,Chipenrich,,,,chipenrich.data,,,,chipexoqual,,,,Chippeakanno,,,,Chipseeker,,,,Chromstar,,,,Chromvar,,,,Cindex,,,,Circrnaprofiler,,,,清理,,,,CN. -ops,,,,CNER,,,,cnvfilter,,,,cnvpanelizer,,,,cnvranger,,,,科吉托,,,,comapr,,,,Compepitools,,,,共识,,,,Conumee,,,,库务,,,,copywriter,,,,Crisprbowtie,,,,Crisprbwa,,,,CRISPRSEEK,,,,crisprvariants,,,,CSAW,,,,CustomProdb,,,,damefinder,,,,达斯珀,,,,Demptumor2sig,,,,深布鲁尔,,,,德芬德,,,,derfinderplot,,,,DESCAN2,,,,Dewseq,,,,Diffhic,,,,diffloop,,,,diffutr,,,,dmrcate,,,,DMRSCAN,,,,DMRSEQ,,,,多米诺骨牌效应,,,,EasyRnaseq,,,,埃尔默,,,,EnhancerHomogsearch,,,,富集,,,,Ensembldb,,,,ememblvep,,,,Epialleler,,,,Epgenomix,,,,Epigrahmm,,,,epitxdb,,,,epivizr,,,,epivizrdata,,,,EPIVIZRSTANTALLONE,,,,Erma,,,,esatac,,,,EventPointer,,,,外观复制,,,,Exomepeak2,,,,伸出,,,,Findit2,,,,FitCons.UCSC.HG19,,,,火焰,,,,弗雷泽,,,,Funchip,,,,Funtoonorm,,,,ga4ghclient,,,,ga4ghshiny,,,,GCAPC,,,,GenBankr,,,,基因贡献,,,,Genogam,,,,基因组化,,,,基因组合,,,,基因组分布,,,,GenomicDistributionsData,,,,Genomicfiles,,,,GenomicInteractionNodes,,,,基因组间,,,,Genomicozone,,,,GenomicsCores,,,,基因组态,,,,Genotypeeval,,,,Genvisr,,,,GGBIO,,,,Gmoviz,,,,哥特,,,,格兰妮,,,,grasp2db,,,,Greylistchip,,,,Guideseq,,,,GVIZ,,,,Gwascat,,,,H5VC,,,,热图,,,,打ic,,,,hicdcplus,,,,HITC,,,,htseqgenie,,,,IDR2D,,,,IMAS,,,,inpas,,,,检查,,,,互动集,,,,同工型间分析仪,,,,IVAS,,,,核粒子,,,,ldblock,,,,Macpet,,,,Madseq,,,,mafdb.1kgenomes.phase1.grch38,,,,mafdb.1kgenomes.phase1.hs37d5,,,,mafdb.1kgenomes.phase3.grch38,,,,mafdb.1kgenomes.phase3.hs37d5,,,,mafdb.exac.r1.0.grch38,,,,mafdb.exac.r1.0.hs37d5,,,,mafdb.exac.r1.0.nontcga.grch38,,,,mafdb.exac.r1.0.nontcga.hs37d5,,,,mafdb.gnomad.r2.1.grch38,,,,mafdb.gnomad.r2.1.hs37d5,,,,mafdb.gnomadex.r2.1.grch38,,,,mafdb.gnomadex.r2.1.hs37d5,,,,mafdb.topmed.freeze5.hg19,,,,mafdb.topmed.freeze5.hg38,,,,mafh5.gnomad.v3.1.1.grch38,,,,mafh5.gnomad.v3.1.2.grch38,,,,马瑟,,,,metagene,,,,metagene2,,,,metaseqr2,,,,metavizr,,,,Methcp,,,,甲基,,,,甲基赫里西氏菌,,,,甲基库,,,,甲基管,,,,甲基Seqdata,,,,甲基化,,,,甲基菌,,,,Minfi,,,,最小值,,,,mmappr2,,,,莫利萨,,,,马赛克,,,,主题2 sote,,,,Motifbreakr,,,,MotifMatchr,,,,MouseFM,,,,MSGBSR,,,,Multicrispr,,,,多希克科姆,,,,mungesumstats,,,,Musicatk,,,,突变模式,,,,myvariant,,,,NADFINDER,,,,附近,,,,netdx,,,,NORMR,,,,,,,,nullranges,,,,nxtirfcore,,,,奥德,,,,OGRE,,,,OMICSPCA,,,,ORFIK,,,,有机体,,,,panelcn.mops,,,,周期性,,,,phastcons100way.ucsc.hg19,,,,phastcons100way.ucsc.hg38,,,,phastcons7way.ucsc.hg38,,,,pi,,,,管框,,,,plyranges,,,,podkat,,,,婴儿车,,,,Prebs,,,,proactiv,,,,profileplyr,,,,Proteodisco,,,,蛋白质组学杂志,,,,属属,,,,qpgraph,,,,QSEA,,,,,,,,R3CPET,,,,R3CSEQ,,,,破烂的经历,,,,Rarevariantvis,,,,rcade,,,,RCAS,,,,RCGH,,,,rcistarget,,,,叙事,,,,补偿,,,,区域人,,,,地区报告,,,,REMP,,,,repitools,,,,Ribocrypt,,,,肋骨蛋白,,,,riboseqr,,,,RibosomeProfilingQC,,,,RJMCMCN核小体,,,,rlseq,,,,rnaeditr,,,,rnamodr,,,,怒吼,,,,rtcgatoolbox,,,,rtracklayer,,,,Scanmir,,,,Scanmirapp,,,,scdblfinder,,,,Scmeth,,,,颈背,,,,片段,,,,Seqarray,,,,seqcat,,,,seqsetvis,,,,芝麻,,,,Sesamedata,,,,塞文,,,,sgseq,,,,Shortread,,,,签名者,,,,sigspack,,,,Singlemoleculefootprinting,,,,Sitadela,,,,Snphood,,,,snplocs.hsapiens.dbsnp141.grch38,,,,snplocs.hsapiens.dbsnp142.grch37,,,,snplocs.hsapiens.dbsnp144.grch37,,,,snplocs.hsapiens.dbsnp144.grch38,,,,snplocs.hsapiens.dbsnp149.grch38,,,,snplocs.hsapiens.dbsnp150.grch38,,,,snplocs.hsapiens.dbsnp151.grch38,,,,snplocs.hsapiens.dbsnp155.grch38,,,,soggi,,,,躯体签名,,,,稀疏,,,,Spatzie,,,,尖刺,,,,剪接图,,,,碎片,,,,Srnadiff,,,,斯坦,,,,Strandcheckr,,,,结构视频隔离,,,,总结性特征,,,,Svanumt,,,,Svaretro,,,,TAPSEQ,,,,tarseqqc,,,,tcgautils,,,,tcgaworkflow,,,,TFBSTOOLS,,,,Titancna,,,,TNT,,,,TrackViewer,,,,transcriptr,,,,Trnascanimport,,,,tsrchitect,,,,TVTB,,,,tximeta,,,,Ularcirc,,,,umi4cats,,,,香草,,,,变体滤波器,,,,变体工具,,,,vasp,,,,vplotr,,,,WigglePlotr,,,,xtrasnplocs.hsapiens.dbsnp141.grch38,,,,xtrasnplocs.hsapiens.dbsnp144.grch37,,,,xtrasnplocs.hsapiens.dbsnp144.grch38,,,,yapsa
建议我 注释,,,,AnnotationHub,,,,BindingsIteFinder,,,,Bioconcotk,,,,Chromswitch,,,,日期,,,,实验室,,,,鱼池,,,,Megadepth,,,,Methrix,,,,parglms,,,,Plotgardener,,,,QDNASEQ,,,,Sctreeviz,,,,飞溅,,,,Systempiper,,,,tfutils,,,,Xcoredata
链接到我
构建报告

包装档案

跟随2021年欧洲杯比分预测 在R会话中使用此软件包的说明。

源包 GenomeInfodB_1.32.2.2.tar.gz
Windows二进制 GenomeInfodB_1.32.2.2.zip(仅64位)
MacOS 10.13(高山脉) GenomeInfodB_1.32.2.tgz
源存储库 git克隆https://git.bioconductor.org/packages/genomeinfodb
源存储库(开发人员访问) git clone git@git.bioconductor.org:packages/genomeInfodB
包装短URL //www.andersvercelli.com/packages/genomeinfodb/
软件包下载报告 下载统计
Bioc 3.15的旧源软件包 来源存档

文档»

生物导体

r/克兰软件包和文档

支持»

请阅读发布指南。向以下位置之一发布有关生物导体的问题:

  • 支持网站- 有关生物处理套件的问题
  • Bioc-devel邮件列表 - 包装开发人员2021欧洲杯体育投注开户