| biocViews |
注释,遗传学,GenomeAnnotation,基础设施,测序,软件 |
| 版本 |
1.42.3 |
| 在Bioconductor中 |
BioC 2.5 (R-2.10)(11.5年) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
BiocGenerics(> = 0.1.0),S4Vectors(> = 0.17.29),IRanges(> = 2.13.23),GenomeInfoDb(> = 1.25.7),GenomicRanges(> = 1.31.17),AnnotationDbi(> = 1.41.4) |
| 进口 |
方法、实用程序、统计、工具、DBI,RSQLite(> = 2.0),RCurl,XVector(> = 0.19.7),Biostrings(> = 2.47.6),rtracklayer(> = 1.39.7),biomaRt(> = 2.17.1),Biobase(> = 2.15.1) |
| 链接 |
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| 建议 |
RMariaDB,org.Mm.eg.db,org.Hs.eg.db,BSgenome,BSgenome.Hsapiens.UCSC.hg19(> = 1.3.17),BSgenome.Celegans.UCSC.ce11,BSgenome.Dmelanogaster.UCSC.dm3(> = 1.3.17),mirbase.db,FDb.UCSC.tRNAs,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Celegans.UCSC.ce11.ensGene,TxDb.Dmelanogaster.UCSC.dm3.ensGene(> = 2.7.1),TxDb.Mmusculus.UCSC.mm10.knownGene(> = 3.4.7),TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,TxDb.Hsapiens.UCSC.hg38.knownGene(> = 3.4.6),SNPlocs.Hsapiens.dbSNP144.GRCh38,Rsamtools,pasillaBamSubset(> = 0.0.5),GenomicAlignments(> = 1.15.7),ensembldb,RUnit,BiocStyle,knitr |
| SystemRequirements |
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| 增强了 |
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| URL |
//www.andersvercelli.com/packages/GenomicFeatures |
| BugReports |
https://github.com/Bioconductor/GenomicFeatures/issues |
| 这取决于我 |
cpvSNP,ensembldb,FDb.FANTOM4.promoters.hg19,FDb.InfiniumMethylation.hg18,FDb.InfiniumMethylation.hg19,FDb.UCSC.snp135common.hg19,FDb.UCSC.snp137common.hg19,FDb.UCSC.tRNAs,generegulation,GSReg,吉他,HelloRanges,Homo.sapiens,ima,InPAS,iva,Mus.musculus,mygene,OrganismDbi,先驱者,RareVariantVis,Rattus.norvegicus,RNAprobR,SplicingGraphs,TxDb.Athaliana.BioMart.plantsmart22,TxDb.Athaliana.BioMart.plantsmart25,TxDb.Athaliana.BioMart.plantsmart28,TxDb.Btaurus.UCSC.bosTau8.refGene,TxDb.Btaurus.UCSC.bosTau9.refGene,TxDb.Celegans.UCSC.ce11.ensGene,TxDb.Celegans.UCSC.ce11.refGene,TxDb.Celegans.UCSC.ce6.ensGene,TxDb.Cfamiliaris.UCSC.canFam3.refGene,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Dmelanogaster.UCSC.dm6.ensGene,TxDb.Drerio.UCSC.danRer10.refGene,TxDb.Drerio.UCSC.danRer11.refGene,TxDb.Ggallus.UCSC.galGal4.refGene,TxDb.Ggallus.UCSC.galGal5.refGene,TxDb.Ggallus.UCSC.galGal6.refGene,TxDb.Hsapiens.BioMart.igis,TxDb.Hsapiens.UCSC.hg18.knownGene,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Mmulatta.UCSC.rheMac10.refGene,TxDb.Mmulatta.UCSC.rheMac3.refGene,TxDb.Mmulatta.UCSC.rheMac8.refGene,TxDb.Mmusculus.UCSC.mm10.ensGene,TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Mmusculus.UCSC.mm39.refGene,TxDb.Mmusculus.UCSC.mm9.knownGene,TxDb.Ptroglodytes.UCSC.panTro4.refGene,TxDb.Ptroglodytes.UCSC.panTro5.refGene,TxDb.Ptroglodytes.UCSC.panTro6.refGene,TxDb.Rnorvegicus.BioMart.igis,TxDb.Rnorvegicus.UCSC.rn4.ensGene,TxDb.Rnorvegicus.UCSC.rn5.refGene,TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq,TxDb.Rnorvegicus.UCSC.rn6.refGene,TxDb.Scerevisiae.UCSC.sacCer2.sgdGene,TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,TxDb.Sscrofa.UCSC.susScr11.refGene,TxDb.Sscrofa.UCSC.susScr3.refGene |
| 进口我 |
AllelicImbalance,高山,AnnotationHubData,annotatr,APAlyzer,appreci8R,ASpediaFI,ASpli,bambu,BgeeCall,BiocOncoTK,biovizBase,bumphunter,BUSpaRse,CAGEfightR,卡斯珀,ChIPpeakAnno,ChIPQC,ChIPseeker,compEpiTools,CompGO,consensusDE,crisprseekplus,csaw,CSSQ,customProDB,dasper,decompTumor2Sig,DegNorm,derfinder,derfinderPlot,DMRcatedata,EDASeq,eisaR,埃尔默,EpiTxDb,epivizrData,epivizrStandalone,esATAC,EventPointer,exomePeak2,FDb.FANTOM4.promoters.hg19,FDb.InfiniumMethylation.hg18,FDb.InfiniumMethylation.hg19,FDb.UCSC.snp135common.hg19,FDb.UCSC.snp137common.hg19,FDb.UCSC.tRNAs,弗雷泽,GA4GHshiny,genbankr,geneAttribution,geneLenDataBase,GenomicState,GenVisR,ggbio,gmapR,gmoviz,gQTLstats,Gviz,gwascat,希尔达,Homo.sapiens,HTSeqGenie,icetea,检查,感兴趣,karyoploteR,光民,mCSEA,metagene,metaseqR2,methyAnalysis,msgbsR,multicrispr,Mus.musculus,musicatk,NoRCE,ORFik,Organism.dplyr,PGA,高伦雅芙,proBAMr,profileplyr,PureCN,qpgraph,QuasR,Rattus.norvegicus,美国广播公司,rCGH,收回,Rhisat2,RiboProfiling,ribosomeProfilingQC,RNAmodR,scRNAseq,颈背,SGSeq,SplicingGraphs,分裂,srnadiff,systemPipeR,TAPseq,TCGAutils,TFEA。芯片,trackViewer,transcriptR,TxDb.Athaliana.BioMart.plantsmart22,TxDb.Athaliana.BioMart.plantsmart25,TxDb.Hsapiens.BioMart.igis,TxDb.Rnorvegicus.BioMart.igis,tximeta,Ularcirc,UMI4Cats,VariantAnnotation,VariantFiltering,VariantTools,wavClusteR |
| 建议我 |
AnnotationHub,强盗,biomvRCNS,Biostrings,BSgenome.Btaurus.UCSC.bosTau3,BSgenome.Btaurus.UCSC.bosTau4,BSgenome.Btaurus.UCSC.bosTau6,BSgenome.Btaurus.UCSC.bosTau8,BSgenome.Btaurus.UCSC.bosTau9,BSgenome.Celegans.UCSC.ce10,BSgenome.Celegans.UCSC.ce11,BSgenome.Celegans.UCSC.ce2,BSgenome.Cfamiliaris.UCSC.canFam2,BSgenome.Cfamiliaris.UCSC.canFam3,BSgenome.Dmelanogaster.UCSC.dm2,BSgenome.Dmelanogaster.UCSC.dm6,BSgenome.Drerio.UCSC.danRer10,BSgenome.Drerio.UCSC.danRer11,BSgenome.Drerio.UCSC.danRer5,BSgenome.Drerio.UCSC.danRer6,BSgenome.Drerio.UCSC.danRer7,BSgenome.Gaculeatus.UCSC.gasAcu1,BSgenome.Ggallus.UCSC.galGal3,BSgenome.Ggallus.UCSC.galGal4,BSgenome.Hsapiens.UCSC.hg17,BSgenome.Mmulatta.UCSC.rheMac2,BSgenome.Mmulatta.UCSC.rheMac3,BSgenome.Mmusculus.UCSC.mm8,BSgenome.Ptroglodytes.UCSC.panTro2,BSgenome.Ptroglodytes.UCSC.panTro3,BSgenome.Rnorvegicus.UCSC.rn6,CAGEWorkflow,chipseq,chromPlot,CrispRVariants,腰带,curatedAdipoChIP,DEXSeq,GenomeInfoDb,GenomicAlignments,GenomicRanges,groHMM,HDF5Array,IRanges,海市蜃楼,MutationalPatterns,网页排名,parathyroidSE,重新计票,RNAmodR。毫升,Rsamtools,rtracklayer,ShortRead,Single.mTEC.Transcriptomes,SummarizedExperiment,TFutils,三硝基甲苯,VplotR,wiggleplotr |
| 链接到我 |
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| 构建报告 |
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