InteractiveComplexHeatmap

DOI:10.18129/B9.bioc.InteractiveComplexHeatmap

Make Interactive Complex Heatmaps

Bioconductor version: Release (3.16)

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("InteractiveComplexHeatmap")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("InteractiveComplexHeatmap")

HTML	R Script	1. How to visualize heatmaps interactively
HTML	R Script	2. How interactive complex heatmap is implemented
HTML	R Script	3. Functions for Shiny app development
HTML	R Script	4. Decorations on heatmaps
HTML	R Script	5. Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap()
HTML	R Script	6. A Shiny app for visualizing DESeq2 results
HTML	R Script	7. Implement interactive heatmap from scratch
HTML	R Script	8. Share interactive heatmaps to collaborators
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Sequencing,Software,Visualization
Version	1.6.0
In Bioconductor since	BioC 3.13 (R-4.1) (1.5 years)
License	MIT + fileLICENSE
Depends	R (>= 4.0.0),ComplexHeatmap(>= 2.11.0)
Imports	grDevices, stats,shiny, grid,GetoptLong,S4Vectors(>= 0.26.1),digest,IRanges,kableExtra(>= 1.3.1), utils,svglite,htmltools,clisymbols,jsonlite,RColorBrewer,fontawesome
LinkingTo
Suggests	knitr,rmarkdown,testthat,EnrichedHeatmap,GenomicRanges,data.table,circlize,GenomicFeatures,tidyverse,tidyHeatmap,集群,org.Hs.eg.db,simplifyEnrichment,GO.db,SC3,GOexpress,SingleCellExperiment,scater,gplots,pheatmap,airway,DESeq2,DT,cola,BiocManager,gridtext,HilbertCurve(>= 1.21.1),shinydashboard,SummarizedExperiment,pkgndep,ks
SystemRequirements
Enhances
URL	https://github.com/jokergoo/InteractiveComplexHeatmap
BugReports	https://github.com/jokergoo/InteractiveComplexHeatmap/issues
Depends On Me
Imports Me
Suggests Me	simplifyEnrichment
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 指令使用这个package in your R session.

Source Package	InteractiveComplexHeatmap_1.6.0.tar.gz
Windows Binary	InteractiveComplexHeatmap_1.6.0.zip(64-bit only)
macOS Binary (x86_64)	InteractiveComplexHeatmap_1.6.0.tgz
macOS Binary (arm64)	InteractiveComplexHeatmap_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/InteractiveComplexHeatmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/InteractiveComplexHeatmap
Bioc Package Browser	https://code.bioconductor.org/browse/InteractiveComplexHeatmap/
Package Short Url	//www.andersvercelli.com/packages/InteractiveComplexHeatmap/
Package Downloads Report	Download Stats