NxtIRFdata

DOI:10.18129/B9.bioc.NxtIRFdata

Data for NxtIRF

Bioconductor version: Release (3.16)

NxtIRFdata is a companion package for SpliceWiz, an interactive analysis and visualization tool for alternative splicing quantitation (including intron retention) for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to demonstrate SpliceWiz's functionality. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.

Author: Alex Chit Hei Wong [aut, cre, cph], Ulf Schmitz [ctb]

Maintainer: Alex Chit Hei Wong

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("NxtIRFdata")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("NxtIRFdata")

HTML	R Script	NxtIRFdata: a data package for NxtIRF
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData,ExperimentHub,ExpressionData,Genome,PackageTypeData,RNASeqData
Version	1.4.0
License	MIT + fileLICENSE
Depends
Imports	ExperimentHub,BiocFileCache,rtracklayer,R.utils
LinkingTo
Suggests	testthat(>= 3.0.0),knitr,rmarkdown
SystemRequirements
Enhances
URL	https://github.com/alexchwong/NxtIRFdata
BugReports	https://support.bioconductor.org/
Depends On Me	NxtIRFcore,SpliceWiz
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	NxtIRFdata_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/NxtIRFdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NxtIRFdata
Package Short Url	//www.andersvercelli.com/packages/NxtIRFdata/
Package Downloads Report	Download Stats