MethCP

DOI:10.18129/B9.bioc.MethCP

This is thedevelopmentversion of MethCP; for the stable release version, seeMethCP.

Differential methylation anlsysis for bisulfite sequencing data

Bioconductor version: Development (3.16)

MethCP is a differentially methylated region (DMR) detecting method for whole-genome bisulfite sequencing (WGBS) data, which is applicable for a wide range of experimental designs beyond the two-group comparisons, such as time-course data. MethCP identifies DMRs based on change point detection, which naturally segments the genome and provides region-level differential analysis.

Author: Boying Gong [aut, cre]

Maintainer: Boying Gong

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("MethCP")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DifferentialMethylation,Sequencing,Software,TimeCourse,WholeGenome
Version	1.11.0
In Bioconductor since	BioC 3.10 (R-3.6) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.6.0)
Imports	methods, utils, stats,S4Vectors,bsseq,DSS,methylKit,DNAcopy,GenomicRanges,IRanges,GenomeInfoDb,BiocParallel
LinkingTo
Suggests	testthat,knitr,rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/boyinggong/methcp/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 指示在R会话中使用这个包.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MethCP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethCP
Package Short Url	//www.andersvercelli.com/packages/MethCP/
Package Downloads Report	Download Stats