cliProfiler

DOI:10.18129/B9.bioc.cliProfiler

This is thedevelopmentversion of cliProfiler; for the stable release version, seecliProfiler.

A package for the CLIP data visualization

Bioconductor version: Development (3.16)

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Author: You Zhou [aut, cre], Kathi Zarnack [aut]

Maintainer: You Zhou

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("cliProfiler")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("cliProfiler")

HTML	R Script	cliProfiler Vignettes
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq,Epigenetics,Genetics,Sequencing,Software,Visualization
Version	1.3.0
In Bioconductor since	BioC 3.14 (R-4.1) (1 year)
License	Artistic-2.0
Depends	S4Vectors, methods, R (>= 4.1)
Imports	dplyr,rtracklayer,GenomicRanges,ggplot2,BSgenome,Biostrings, utils
LinkingTo
Suggests	knitr,rmarkdown,bookdown,testthat,BiocStyle
SystemRequirements
Enhances
URL	https://github.com/Codezy99/cliProfiler
BugReports	https://github.com/Codezy99/cliProfiler/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	cliProfiler_1.3.0.tar.gz
Windows Binary	cliProfiler_1.3.0.zip
macOS 10.13 (High Sierra)	cliProfiler_1.3.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cliProfiler
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cliProfiler
Package Short Url	//www.andersvercelli.com/packages/cliProfiler/
Package Downloads Report	Download Stats