nucleR

DOI:10.18129/B9.bioc.nucleR

This is thedevelopmentversion of nucleR; for the stable release version, seenucleR.

Nucleosome positioning package for R

Bioconductor version: Development (3.16)

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Alba Sala

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("nucleR")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("nucleR")

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq,Coverage,DataImport,Genetics,Microarray,NucleosomePositioning,QualityControl,Sequencing,Software
Version	2.29.0
In Bioconductor since	BioC 2.9 (R-2.14) (10.5 years)
License	LGPL (>= 3)
Depends	R (>= 3.5.0), methods
Imports	Biobase,BiocGenerics,Biostrings,GenomeInfoDb,GenomicRanges,IRanges,Rsamtools,S4Vectors,ShortRead,dplyr,ggplot2,magrittr, parallel, stats, utils, grDevices
LinkingTo
Suggests	BiocStyle,knitr,rmarkdown,testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	nucleR_2.29.0.tar.gz
Windows Binary	nucleR_2.29.0.zip
macOS 10.13 (High Sierra)	nucleR_2.29.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nucleR
Package Short Url	//www.andersvercelli.com/packages/nucleR/
Package Downloads Report	Download Stats