pdInfoBuilder

DOI:10.18129/B9.bioc.pdInfoBuilder

This is thedevelopmentversion of pdInfoBuilder; for the stable release version, seepdInfoBuilder.

Platform Design Information Package Builder

Bioconductor version: Development (3.16)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("pdInfoBuilder")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("pdInfoBuilder")

PDF		Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF	R Script	PDInfo Package Building Affymetrix Mapping Chips
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation,Infrastructure,Software
Version	1.61.0
In Bioconductor since	BioC 2.0 (R-2.5) (15 years)
License	Artistic-2.0
Depends	R (>= 3.2.0), methods,Biobase(>= 2.27.3),RSQLite(>= 1.0.0),affxparser(>= 1.39.4),oligo(>= 1.31.5)
Imports	Biostrings(>= 2.35.12),BiocGenerics(>= 0.13.11),DBI(>= 0.3.1),IRanges(>= 2.1.43),oligoClasses(>= 1.29.6),S4Vectors(>= 0.5.22)
LinkingTo
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URL
Depends On Me
Imports Me
Suggests Me	maqcExpression4plex
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	pdInfoBuilder_1.61.0.tar.gz
Windows Binary	pdInfoBuilder_1.61.0.zip(64-bit only)
macOS 10.13 (High Sierra)	pdInfoBuilder_1.61.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pdInfoBuilder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pdInfoBuilder
Package Short Url	//www.andersvercelli.com/packages/pdInfoBuilder/
Package Downloads Report	Download Stats