版本1.56的变化-----------------------重大用户可见的变化goSlim()不截断条款(https://github.com/Bioconductor/GSEABase/issues/5)版本1.54的变化-----------------------重大用户可见的变化组织数据库不再提供Unigene信息。删除的支持。版本1.39的更改-----------------------错误修复o goSlim()没有正确计数重复的标识符。(https://support.bioconductor.org/p/100403/)版本1.35的更改-----------------------错误修复了一些多行警告和错误将失败而不报告错误消息。o getGmt(), GO GeneSetCollection方法更快。版本1.31的变化-----------------------重要的用户可见的变化o支持'h'宽集错误修复o作为(OBOCollection,"graphNEL")未能包括多个子版本1.23的变化-----------------------重大用户可见的变化o支持'c7'宽集警告或删除重复的基因id时,解析GMT或广泛的XML变化在版本1.21 -----------------------重大用户可见的变化o GeneSetCollection,*,*, gocollection -方法方面的证据码和本体的变化在版本1.19 -----------------------新功能o添加了UniprotIdentifier类变化在版本1.13----------------------- 阿新特性解析子类别广泛的基因集。用户可见的重大变化一个特殊标识符取代了基于ruuid的标识符。在1.5版的变化----------------------重要的用户可见的变化构造函数类EntrezIdentifier,酶标识符,GenenameIdentifier, RefseqIdentifier, SymbolIdentifier, UnigeneIdentifier现在可以接受一个'annotation'参数。 This is used to indicate which annotation package the identifiers are from, e.g., EntrezIdentifier("hgu95av2.db") indicates that the EntrezId's are from the hgu95av2.db package. o GOCollection now tracks ontology as well as evidenceCode. o Add ComputedCollection class to describe gene set collections resulting from computations. o Additional GeneSetCollection constructors o Add OBOCollection class for reading OBO gene sets, including functions to retrieve OBO collections from the internet (getOBOCollectoin) and convert OBOCollections to and from graphNEL objects. o GeneSets constructed from GOCollections require a geneIdType with an appropriate (i.e., GO to identifier) mapping, e.g., geneIdType=EntrezIdentifier("org.Hs.eg.db") NEW FEATURES o geneIdType<- and mapIdentifiers can now map between any two identifier types within an annotation package, e.g., SymbolIdentifer('org.Hs.eg.db') to GenenameIdentifier('org.Hs.eg.db') o Parse revised Broad gene sets. o More extensive information in some 'show' methods o Added a mapIdentifiers method to allow maps with user-supplied AnnDbBimap objects BUG FIXES o GO evidenceCodes updated to current codes available as defined in GO o GeneSetCollection,ExpressionSet,(Pfam|Prosite|Chrloc)Collection-method now correctly navigate the underlying annotations and create gene set collections o A GeneSetCollection constructed with a named list could incorrectly propagate the set names. o Export MapCollection class o Mapping AnnotationIdentifer to AnnotationIdentifier failed due to incorrect method selection (start date: 9 February, 2008)