# #——风格,回声= FALSE,结果=“黑名单”,消息= FALSE ------------------------- knitr: opts_chunk美元集(整洁= FALSE,警告= FALSE,消息= FALSE,缓存= TRUE ) ## ----------------------------------------------------------------------------- BiocManager::安装(“MetaVolcanoR”,eval = FALSE ) ## ----------------------------------------------------------------------------- 库(MetaVolcanoR ) ## ----------------------------------------------------------------------------- 数据(diffexplist)类(diffexplist)头(diffexplist [[1]]) (diffexplist长度 ) ## ----------------------------------------------------------------------------- meta_degs_rem < rem_mv (diffexp = diffexplist pcriteria =“pvalue foldchangecol = Log2FC, genenamecol =‘象征’,geneidcol =零,塌陷= FALSE, llcol = ' CI。L CI, rlcol =。R'， vcol=NULL, cvar=TRUE, metathr=0.01, jobname="MetaVolcano"， outputfolder="."， draw='HTML'， ncores=1) head(meta_degs_rem@metaresult, 3) meta_degs_rem@MetaVolcano draw_forest(remres=meta_degs_rem, gene="MMP9"， genecol="Symbol"， foldchangecol="Log2FC"， llcol="CI. name "， outputfolder="."L”,rlcol = " CI。draw_forest(remres=meta_degs_rem, gene="COL6A6"， genecol="Symbol"， foldchangecol="Log2FC"， llcol="CI. R"， jobname="MetaVolcano"， outputfolder="."， draw="HTML")L”,rlcol = " CI。R”,jobname = " MetaVolcano”,outputfolder = "。”,画= " HTML ") ## ----------------------------------------------------------------------------- meta_degs_vote < - votecount_mv (diffexp = diffexplist pcriteria = pvalue, foldchangecol = Log2FC, genenamecol =‘象征’,geneidcol = NULL, pvalue = 0.05, foldchange = 0, metathr = 0.01,塌陷= FALSE, jobname =“MetaVolcano outputfolder =“。”,画=“HTML”)(meta_degs_vote@metaresult,3) meta_degs_vote@degfreq ## ----------------------------------------------------------------------------- meta_degs_vote@MetaVolcano ## ----------------------------------------------------------------------------- meta_degs_comb < - combining_mv (diffexp = diffexplist pcriteria = pvalue, foldchangecol = Log2FC, genenamecol =‘象征’,geneidcol = NULL, metafc =“的意思是”,metathr = 0.01,塌陷= TRUE, jobname =“MetaVolcano outputfolder =“。”,画=“HTML”)(meta_degs_comb@metaresult,3) meta_degs_comb@MetaVolcano