# # - eval = FALSE --------------------------------------------------------------- # 如果(! requireNamespace(“BiocManager”))# install.packages (BiocManager) # BiocManager::安装(“RTCGAToolbox ") ## ----------------------------------------------------------------------------- 库(RTCGAToolbox) # getFirehoseDatasets有效的别名 () ## ----------------------------------------------------------------------------- # 有效运行stddata getFirehoseRunningDates(去年= 3)# #----------------------------------------------------------------------------- # 有效分析运行日期(将返回3最近日期)getFirehoseAnalyzeDates (= 3 ) ## ---- 消息= FALSE ----------------------------------------------------------- # 读突变数据和临床数据brcaData < getFirehoseData(数据集=“读”,runDate =“20160128”,forceDownload = TRUE,临床= TRUE,突变= TRUE ) ## ----------------------------------------------------------------------------- brcaData ## ----------------------------------------------------------------------------- 数据(accmini) accmini ## ----------------------------------------------------------------------------- biocExtract (accmini RNASeq2Gene) biocExtract (CNASNP accmini。 ") ## ----------------------------------------------------------------------------- 头(getData (accmini“临床”))getData (accmini,“RNASeq2GeneNorm”)getData (accmini、“GISTIC”、“AllByGene ") ## ----------------------------------------------------------------------------- sessionInfo ()