本文档中提供的功能解释道a4Preproc包中。
这个包包含实用函数来预处理数据的自动化Affymetrix阵列分析套件包。
功能注释为一个特定的数据集,提取所需的管道的addGeneInfo函数。
库(全部)数据(所有)a4ALL < - addGeneInfo (eset =)打印(头(fData (a4ALL)))# # # # ENTREZID ENSEMBLID象征1000 _at 5595 ENSG00000102882 MAPK3 # # 1001 _at 7075 ENSG00000066056 TIE1 # # 1002 _f_at 1557 ENSG00000165841 CYP2C19 # # 1003 _s_at 643 ENSG00000160683 CXCR5 # # 1004 _at 643 ENSG00000160683 CXCR5 # # 1005 _at 1843 ENSG00000120129 DUSP1 # # GENENAME # # 1000 _at增殖蛋白激酶3 # # 1001 _at酪氨酸激酶与免疫球蛋白和EGF像域1 # # 1002 _f_at细胞色素P450家庭2亚科19 # # 1003 C成员_s_at C-X-C主题趋化因子受体5 # # 1004 _at C-X-C主题趋化因子受体5 # # 1005 _at双特异性磷酸酶1打印(头(featureData (a4ALL)))# #一个类的对象“AnnotatedDataFrame”# # featureNames: 1000 _at 1001 _at……1005 _at (6) # # varLabels: ENTREZID ENSEMBLID象征GENENAME # # varMetadata: labelDescription# # R正在开发的(不稳定的)(2022-10-25 r83175) # #平台:x86_64-pc-linux-gnu(64位)# #下运行:Ubuntu 22.04.1 LTS # # # #矩阵产品:默认# #布拉斯特区:/home/biocbuild/bbs - 3.17 - bioc / R / lib / libRblas。所以# # LAPACK: /usr/lib/x86_64-linux-gnu / LAPACK liblapack.so.3.10.0 # # # #语言环境:# # [1]LC_CTYPE = en_US。utf - 8 LC_NUMERIC = C # #[3]而= en_GB LC_COLLATE = C # # [5] LC_MONETARY = en_US。utf - 8 LC_MESSAGES = en_US。utf - 8 # # [7] LC_PAPER = en_US。utf - 8 LC_NAME = C # # [9] LC_ADDRESS C = C LC_TELEPHONE = # # [11] LC_MEASUREMENT = en_US。utf - 8 LC_IDENTIFICATION = C附加基本包:# # # # # # [1]stats4统计图形grDevices跑龙套数据集方法# # # # # #[8]基地其他附加包:# # [1]hgu95av2.db_3.13.0 org.Hs.eg.db_3.16.0 AnnotationDbi_1.61.0 # # [4] IRanges_2.33.0 S4Vectors_0.37.0 ALL_1.39.0 # # [7] Biobase_2.59.0 BiocGenerics_0.45.0 a4Preproc_1.47.0 # # # #通过加载一个名称空间(而不是附加):# # [1]bit_4.0.4 jsonlite_1.8.3 compiler_4.3.0 # # [4] crayon_1.5.2 Rcpp_1.0.9 blob_1.2.3 # # [7] stringr_1.4.1 bitops_1.0-7 Biostrings_2.67.0 # # [10] jquerylib_0.1.4 png_0.1-7 yaml_2.3.6 # # [13] fastmap_1.1.0 R6_2.5.1 XVector_0.39.0 # # [16] GenomeInfoDb_1.35.0 knitr_1.40 GenomeInfoDbData_1.2.9 # # [19] DBI_1.1.3 bslib_0.4.0 rlang_1.0.6 # # [22] KEGGREST_1.39.0 cachem_1.0.6 stringi_1.7.8 # # [25] xfun_0.34 sass_0.4.2 bit64_4.0.5 # # [28] RSQLite_2.2.18 memoise_2.0.1 cli_3.4.1 # # [31] magrittr_2.0.3 zlibbioc_1.45.0 digest_0.6.30 # # [34] vctrs_0.5.0 evaluate_0.17 rcurl_1.98 - 1.9 # # [37] rmarkdown_2.17 httr_1.4.4 pkgconfig_2.0.3 # # [40] tools_4.3.0 htmltools_0.5.3