CopyhelpeR

DOI:10.18129/B9.bioc.CopyhelpeR

This is thedevelopmentversion of CopyhelpeR; for the stable release version, seeCopyhelpeR.

Helper files for CopywriteR

Bioconductor version: Development (3.16)

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Oscar Krijgsman

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("CopyhelpeR")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("CopyhelpeR")

PDF	R Script	CopyhelpeR
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData,GenomicSequence,Homo_sapiens
Version	1.29.0
License	GPL-2
Depends	R (>= 3.5.0)
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	CopywriteR
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	CopyhelpeR_1.29.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/CopyhelpeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CopyhelpeR
Package Short Url	//www.andersvercelli.com/packages/CopyhelpeR/
Package Downloads Report	Download Stats